Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B04
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    25   2.6  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    24   6.0  

>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 125 SITSRRKKSEVPKETTLPIKINYTRGMRSSHAR 27
           SI  R  K+    E TLP+ I    G R  H R
Sbjct: 225 SIKKRSSKNHTTDEPTLPVNIIGDVGERKKHRR 257


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -2

Query: 179 NTNHFVNVFVQPYTIILFSITSRRKKSEVPKETTLPIKINYTRGMRSSH 33
           +T H+ N + +   +  F+  S+++  + PK T +    N+ R   S H
Sbjct: 284 DTKHYKNEWAESINLDNFNRPSQQEDYDKPKNTQVSRSSNHHRRYDSYH 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,112
Number of Sequences: 5004
Number of extensions: 20962
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)