Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B04
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0416 - 17399059-17399777,17400560-17400704                       29   0.78 
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508...    28   1.8  
08_02_1582 + 28007169-28007188,28007278-28007312,28007945-280081...    27   3.1  
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089...    27   3.1  
02_01_0532 + 3863744-3863754,3864223-3864874                           27   3.1  
06_01_0030 - 296681-296789,296903-297105,297348-297426,297512-29...    26   9.6  

>09_04_0416 - 17399059-17399777,17400560-17400704
          Length = 287

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 113 RRKKSEVPKETTLPIKINYTRGMRSSHARGV*TTNPR 3
           RRK    P  TT P++I   RG      RG    +PR
Sbjct: 106 RRKTGPAPTMTTQPLRIRIGRGEEEGRGRGELEVDPR 142


>03_05_0176 +
           21546952-21547887,21548856-21548921,21549959-21550877,
           21551277-21551449,21551927-21552475
          Length = 880

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 110 RKKSEVPKETTLPIKINYTRGMRSSHARGV 21
           R+   +P ET + + ++  RGM   HARGV
Sbjct: 136 REPYSLPPETIVRLALDVARGMEYLHARGV 165


>08_02_1582 +
           28007169-28007188,28007278-28007312,28007945-28008130,
           28008783-28008962,28009290-28009474,28009593-28009688,
           28009888-28009933,28010054-28010160,28010893-28010994,
           28011080-28011614,28012296-28012366,28012747-28012830
          Length = 548

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +2

Query: 173 LYCDGIRMRRRERPPHGASLSPSPL*VV--LDDIYMM 277
           LYC G+  +++E+ PHG  ++ S L +V  +D+++ M
Sbjct: 487 LYCQGLLGQQQEQ-PHGQEMATSALLLVIGMDELFQM 522


>03_05_0530 -
           25306788-25306919,25307446-25308037,25308152-25308975,
           25309533-25309592,25310115-25310180,25310318-25310461,
           25310616-25310756,25310898-25311056,25311818-25311884,
           25311986-25312158,25312237-25312333,25312410-25312528,
           25312867-25312951,25313120-25313321,25314456-25314633
          Length = 1012

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/58 (31%), Positives = 22/58 (37%)
 Frame = -1

Query: 324 LQKCFXXXXXXXXXXXXX*MSSSTTYRGDGESDAPCGGRSRRRILIPSQYKSFC*RFC 151
           LQ+ F               SS    R DG  +A  GGR + RI +   Y S    FC
Sbjct: 393 LQETFCLSQEYDEERLSNKKSSDKLCRKDGRDEASEGGRFQHRICLCWSYGSHIRSFC 450


>02_01_0532 + 3863744-3863754,3864223-3864874
          Length = 220

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 80  TLPIKINYTRGMRSSHARGV*TTNP 6
           ++PI IN T   R SH RG  T NP
Sbjct: 98  SIPIGINDTGDCRRSHHRGATTRNP 122


>06_01_0030 -
           296681-296789,296903-297105,297348-297426,297512-297877,
           298590-298956,299235-299373,299461-299731,299849-299958,
           300567-300704
          Length = 593

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 167 NDLYCDGIRMRRRERPPHGASLSPS 241
           N LYC  ++ +++ + PHG+S S S
Sbjct: 546 NMLYCGLLKDKQKAQKPHGSSSSSS 570


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,161,322
Number of Sequences: 37544
Number of extensions: 132054
Number of successful extensions: 315
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)