Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B04
         (351 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   2.5  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   2.5  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    22   5.8  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    22   5.8  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    22   5.8  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    22   5.8  
AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    22   5.8  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 11  WSFTRHERGCSSFP 52
           W F R  RGC++ P
Sbjct: 400 WQFVRIRRGCNTLP 413


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 167 FVNVFVQPYTIILFSITSRRK 105
           F +   +PY  I+F+IT RRK
Sbjct: 218 FYSCCEEPYPDIIFNITLRRK 238


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 149 QPYTIILFSITSRRK 105
           +PY  I F+IT RRK
Sbjct: 228 EPYLDITFNITMRRK 242


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 149 QPYTIILFSITSRRK 105
           +PY  I F+IT RRK
Sbjct: 228 EPYLDITFNITMRRK 242


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 149 QPYTIILFSITSRRK 105
           +PY  I F+IT RRK
Sbjct: 224 EPYLDITFNITMRRK 238


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 149 QPYTIILFSITSRRK 105
           +PY  I F+IT RRK
Sbjct: 237 EPYPDIFFNITLRRK 251


>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 167 FVNVFVQPYTII--LFSITSRRKKSEVPKETTLPIKINYTRGMRSS 36
           F+ VFV P+TII  L +IT+           T+ I  +Y   +R S
Sbjct: 289 FILVFVVPFTIIVVLNTITALTVWKFASIRRTMTIPRSYGTNVRES 334


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 320,323
Number of Sequences: 2352
Number of extensions: 5589
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 25364985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)