Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B04
(351 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 27 0.049
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 1.0
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 1.4
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 1.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 1.8
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 1.8
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 1.8
U66709-1|AAB07515.1| 182|Apis mellifera ankyrin protein. 21 5.6
DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 21 5.6
DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 21 5.6
DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 21 5.6
DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 21 5.6
DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 21 5.6
DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 21 5.6
DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 21 5.6
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 5.6
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 5.6
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 5.6
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 5.6
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 5.6
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 5.6
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 5.6
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 21 5.6
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 5.6
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 20 9.8
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 27.5 bits (58), Expect = 0.049
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 63 NLYRKRSFLRHLRFFTSRCN*K*NYCIWLYKN--VNKMICIVMELGCGV 203
N++R SF ++ + T + N+ +WLYK+ + M+ + ++L C +
Sbjct: 117 NMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAM 165
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.0 bits (47), Expect = 1.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 149 QPYTIILFSITSRRK 105
+PY+ I F+IT RRK
Sbjct: 234 EPYSDITFNITMRRK 248
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.6 bits (46), Expect = 1.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 149 QPYTIILFSITSRRK 105
+PY I+F+IT RRK
Sbjct: 221 EPYPDIVFNITLRRK 235
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 1.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 149 QPYTIILFSITSRRK 105
+PY I F+IT RRK
Sbjct: 229 EPYLDITFNITMRRK 243
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 1.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 149 QPYTIILFSITSRRK 105
+PY I F+IT RRK
Sbjct: 229 EPYLDITFNITMRRK 243
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 1.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 149 QPYTIILFSITSRRK 105
+PY I F+IT RRK
Sbjct: 225 EPYLDITFNITMRRK 239
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 1.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 149 QPYTIILFSITSRRK 105
+PY I F+IT RRK
Sbjct: 220 EPYPDIFFNITLRRK 234
>U66709-1|AAB07515.1| 182|Apis mellifera ankyrin protein.
Length = 182
Score = 20.6 bits (41), Expect = 5.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 131 LFSITSRRKKSEVPKETTLPIKINYTRGM 45
+ +I RR+K P T+P+ +GM
Sbjct: 38 VITIEPRRRKFHKPITLTIPVPQAANKGM 66
>DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 74 GRSREHRIIPSHY 86
>DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 74 GRSREHRIIPSHY 86
>DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 74 GRSREHRIIPSHY 86
>DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 74 GRSREHRIIPSHY 86
>DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 74 GRSREHRIIPSHY 86
>DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 74 GRSREHRIIPSHY 86
>DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 74 GRSREHRIIPSHY 86
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 323 GRSREHRIIPSHY 335
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 323 GRSREHRIIPSHY 335
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 323 GRSREHRIIPSHY 335
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 323 GRSREHRIIPSHY 335
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 323 GRSREHRIIPSHY 335
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 323 GRSREHRIIPSHY 335
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 322 GRSREHRIIPSHY 334
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 307 GRSREHRIIPSHY 319
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 20.6 bits (41), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 213 GRSRRRILIPSQY 175
GRSR +IPS Y
Sbjct: 323 GRSREHRIIPSHY 335
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 19.8 bits (39), Expect = 9.8
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -1
Query: 54 KGNEEQPRSWRVNDQPSC 1
KG + PRS R P C
Sbjct: 63 KGPRDFPRSHRFKSLPRC 80
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,539
Number of Sequences: 438
Number of extensions: 1975
Number of successful extensions: 25
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8060325
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -