Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B03
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...    77   1e-15
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          25   5.8  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   7.6  

>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 77.0 bits (181), Expect = 1e-15
 Identities = 30/65 (46%), Positives = 47/65 (72%)
 Frame = +1

Query: 274 MAAKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREP 453
           M  K +      ++ RF++ELEFVQ L+NP Y++FLAQ  Y +++ F+ YL+Y++YWREP
Sbjct: 1   METKWLLSKVPDDKSRFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREP 60

Query: 454 EYARY 468
           EY ++
Sbjct: 61  EYVKF 65


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = +2

Query: 89  FSILVYSMIEVITRSRNSIIEYSISAVTEL 178
           FS+ +++ IE + +S+N+ +E S+S + E+
Sbjct: 67  FSLWLFNQIEELEKSKNASVE-SVSKIDEI 95


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 334 LEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWRE 450
           LE+ +C+A    +  LA  GY     ++  L  L Y RE
Sbjct: 471 LEYNECVAAAQLLDHLAACGYFFFSKYIARLASLGYLRE 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,566
Number of Sequences: 5004
Number of extensions: 28134
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)