Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B02
(227 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 26 0.77
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 1.3
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 1.8
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 24 3.1
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 23 4.1
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 23 5.4
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 23 7.2
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 23 7.2
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 22 9.5
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 22 9.5
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 22 9.5
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 0.77
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 189 ETITVKYVLPDTIDVNYTLFCSLSPSRVLSNNDLQS 82
+ + + ++L D+ + C+ SPS +L++ND QS
Sbjct: 290 QKLRMPFLLHDSYTEDEISICAESPSYMLASNDAQS 325
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 1.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 140 ILYSVVCHRRVYLVITTCKVKPRL*QLFLIL 48
I + V CH +Y+V T +KP LF+++
Sbjct: 325 IFFWVWCHSLLYIVPKTLPIKPLSSLLFVLI 355
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 153 LYPATHILLLSFPLEKCLNPR 215
+YP H + + P EK L+PR
Sbjct: 499 VYPIRHSVSIEMPSEKLLSPR 519
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = -1
Query: 107 YLVITTCKVKPRL*QLFLILY 45
+L+++ C+VK + +LF++LY
Sbjct: 439 HLLLSRCEVKDCIHRLFMVLY 459
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 144 NYTLFCSLSPSRVLSNNDLQS 82
NYT FC + + +NN +QS
Sbjct: 215 NYTTFCRMLDEPLPANNPVQS 235
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 132 IEYN*RLLYPATHILLLSFPLEKCLNPR 215
+E N L+ +H++ L FPL K +P+
Sbjct: 1025 VENNLDLVLQKSHLIELLFPLMKLSDPK 1052
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 13 YVIPIGYCLYLYKIKN 60
YV GYCL++Y K+
Sbjct: 195 YVCDCGYCLHVYCCKH 210
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 153 LYPATHILLLSFPLEKCLNPRTV 221
L H+L SFP ++C+ +T+
Sbjct: 361 LVELAHLLRSSFPTQRCIAIQTI 383
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 204 GTFRAETITVKYVLPDTIDVNYTLFCSLSPS 112
G+ R ET+ +K L + D L C +PS
Sbjct: 145 GSQRRETVPLKSALHELRDEQVQLQCRQAPS 175
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 142 INVYCIRQHIFYCYRFRS 195
I + C R +F+C+RF+S
Sbjct: 64 IRIQC-RDFMFFCWRFQS 80
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 149 SIVSGNTYFTVIVSA 193
++VSG+ +FT +VSA
Sbjct: 308 TVVSGSRFFTSVVSA 322
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 149 SIVSGNTYFTVIVSA 193
++VSG+ +FT +VSA
Sbjct: 448 TVVSGSRFFTSVVSA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 901,482
Number of Sequences: 5004
Number of extensions: 14215
Number of successful extensions: 42
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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