Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B02
         (227 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0021 - 14017292-14017360,14017463-14017550,14017639-140177...    27   2.8  
03_02_0340 + 7635354-7635621,7635992-7636121,7636865-7636929,763...    26   3.7  
01_01_0505 - 3695937-3695972,3696251-3696316,3696658-3696747,369...    26   3.7  
06_02_0366 - 15202400-15202413,15202888-15202979,15203101-152031...    26   4.9  
02_04_0639 + 24662786-24663451                                         26   4.9  
08_02_0575 - 18876988-18877029,18877072-18877102,18878290-188784...    25   6.5  
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772...    25   8.6  

>02_03_0021 -
           14017292-14017360,14017463-14017550,14017639-14017748,
           14018505-14018606,14019903-14019977,14020060-14020193,
           14020732-14020948
          Length = 264

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 189 ETITVKYVLPDTIDVNYTLFCSL 121
           + I V Y +PD ++ N  L+C L
Sbjct: 59  DMIVVDYTVPDAVNANAELYCKL 81


>03_02_0340 +
           7635354-7635621,7635992-7636121,7636865-7636929,
           7637255-7637529,7640204-7640441,7641095-7641228,
           7641340-7641414,7641675-7641776,7642154-7642263,
           7642334-7642430
          Length = 497

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 189 ETITVKYVLPDTIDVNYTLFCSL 121
           + + V Y  PD+++ N  L+C L
Sbjct: 312 DVVVVDYTAPDSVNANAELYCKL 334


>01_01_0505 -
           3695937-3695972,3696251-3696316,3696658-3696747,
           3696934-3697143,3697371-3697404,3697566-3697912
          Length = 260

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 7   GIYVI-PIGYCLYLYKIKNNCYSR 75
           G Y+I P G  +Y   IKN CYS+
Sbjct: 154 GTYIIAPAGESVYDQSIKNPCYSK 177


>06_02_0366 -
           15202400-15202413,15202888-15202979,15203101-15203171,
           15203275-15203334,15203582-15203685,15203746-15203800
          Length = 131

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 19  IPIGYCLYLYKIKNNCYSRGLT 84
           +PIG+ L  +K  N C+S GL+
Sbjct: 63  VPIGFHLRFWKEPNECHSIGLS 84


>02_04_0639 + 24662786-24663451
          Length = 221

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 213 VGSGTFRAET-ITVKY-VLPDTIDVNYTLFCSLSPSRVL 103
           VGSG F     +T  +   PD+ DV Y L+  L P R L
Sbjct: 180 VGSGEFSPRCGVTTDFPTFPDSPDVPYPLYQVLQPGRRL 218


>08_02_0575 -
           18876988-18877029,18877072-18877102,18878290-18878418,
           18878512-18879154,18882042-18883990,18884964-18885040
          Length = 956

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 211 GFRHFSSGNDNSKICVAG 158
           GF+H S    ++KIC+AG
Sbjct: 622 GFKHLSGVKVSAKICIAG 639


>03_02_0349 -
           7722461-7723069,7723494-7724221,7724281-7724641,
           7724751-7725072,7725183-7725661,7726157-7726430,
           7726598-7726884,7726966-7727388,7727545-7727890,
           7728011-7728328,7729817-7731081
          Length = 1803

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 150 LLYPATHILLLSFPLEKCLNP 212
           + YPAT +++L F +E C  P
Sbjct: 882 VFYPATDVVVLKFMVEVCWAP 902


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,456,377
Number of Sequences: 37544
Number of extensions: 78716
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 268085412
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)