Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B02
         (227 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016688-4|AAB66075.2|  481|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    25   5.5  

>AF016688-4|AAB66075.2|  481|Caenorhabditis elegans Hypothetical
           protein F18A12.3 protein.
          Length = 481

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 189 ETITVKYVLPDTIDVNYT-LFCSLS-PSRV 106
           ETI++  +LPD   VN++ L   +S PSRV
Sbjct: 264 ETISLNLILPDVRSVNFSGLIAEMSHPSRV 293


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
           protein T20G5.5 protein.
          Length = 1234

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 140 ILYSVVCHRRVYLVITTCKVKP 75
           +L S VC++ +YL  TTC V P
Sbjct: 881 VLPSDVCNQIIYLADTTCFVLP 902


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,000,441
Number of Sequences: 27780
Number of extensions: 79477
Number of successful extensions: 136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,740,198
effective HSP length: 55
effective length of database: 11,212,298
effective search space used: 224245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)