Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_B01
         (234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    36   0.001
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    33   0.005
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   1.3  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   1.8  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    23   4.1  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    23   5.4  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    23   5.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   5.4  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    23   7.1  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    22   9.4  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    22   9.4  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    22   9.4  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 35.5 bits (78), Expect = 0.001
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 135 MSVDKEELVQRAKLAEQAERYDDLAAAMKEV 227
           MS  +E  V  AKLAEQAERY+++   MK+V
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKV 31


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 33.1 bits (72), Expect = 0.005
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 138 SVDKEELVQRAKLAEQAERYDDLAAAMKEV 227
           +  +E+ V  AKLAEQAERY+ +   MK V
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSV 32


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 234 FPSLPSSRPPGHHIVQPAQPTW 169
           +P +PS   PG HIV   QPT+
Sbjct: 193 YPQMPSLNQPGLHIVN--QPTY 212


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -1

Query: 222 PSSRPPGHHIVQPAQPTWRVVLVPPYRRTSWTME 121
           PS  P G HI  P      V  V    R +WT E
Sbjct: 230 PSWSPDGKHIAAPNAMNGPVSCVSIIERGTWTSE 263


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 91  SNKGISEINIFHRPRCPSIRRN*YNAPSWLSRLND 195
           S + I E+     P+C       +NAP W S L D
Sbjct: 85  SMEEIIELKGVELPKCLPKHARYHNAPKWRSSLMD 119


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 20  SISFAAREKPKKFCNLLVNYRFTLPTRA-SVKSISS 124
           S S  A    K+  +LL+  RFTLP R  SV  +SS
Sbjct: 30  SFSSVASVSLKRSGDLLLFERFTLPARTRSVALLSS 65


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -1

Query: 219 SSRPPGHHIVQPAQPTWRVVLVPPYRRTSWTMEDIDFTDALVGRVK 82
           S  PP    + P+ P   +    P RR + + +DI  T      +K
Sbjct: 467 SMAPPSPSPISPSFPLHEIQSPMPNRRMAASADDISQTSNFTTEIK 512


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 231 PSLPSSRPP 205
           PS+PSSRPP
Sbjct: 234 PSIPSSRPP 242



 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 231 PSLPSSRPPGHHIVQPAQP 175
           PSLP S PP   +  PA P
Sbjct: 429 PSLPPSAPPSLPMGAPAAP 447


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 180 QPTWRVVLVPPYRRTSW 130
           +PTW+V LV PY++ SW
Sbjct: 28  EPTWKVDLV-PYKQ-SW 42


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 2   HRCRHCSISFAAREKPKKFCNLLV 73
           ++C  C     AR K  + CN+ V
Sbjct: 158 NKCSTCKFEKPARSKHCRLCNICV 181


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +3

Query: 21  VYRSPQE-KNRKSFAIC*LITVL--PFQQGHQ*NQYLPSSTMSVDKEELVQRAKLAEQAE 191
           +Y S  E K+R  F    LI  L  P +Q       + SST S D  ELV+      +  
Sbjct: 164 IYTSLDECKSRAIFTDPNLIPKLLGPLKQSTWVKLIVCSSTPSEDLVELVKSTAPDVEII 223

Query: 192 RYDDLAAAMKE 224
            YD+L +  KE
Sbjct: 224 TYDNLLSLGKE 234


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 213 RPPGHHIVQPAQP 175
           RPPGHH  +P +P
Sbjct: 190 RPPGHH-AEPHKP 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 952,630
Number of Sequences: 5004
Number of extensions: 16206
Number of successful extensions: 42
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)