Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_B01
(234 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical pr... 56 3e-09
U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein ... 56 3e-09
Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical pr... 56 3e-09
Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical pr... 56 3e-09
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 28 0.77
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 28 0.77
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 28 0.77
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 28 0.77
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 28 0.77
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 26 3.1
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 26 3.1
U42436-4|AAF99896.2| 297|Caenorhabditis elegans Hypothetical pr... 25 5.4
U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical pr... 25 9.5
>Z73910-2|CAA98138.1| 248|Caenorhabditis elegans Hypothetical
protein M117.2 protein.
Length = 248
Score = 56.4 bits (130), Expect = 3e-09
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +3
Query: 135 MSVDKEELVQRAKLAEQAERYDDLAAAMKEVTE 233
MS EELVQRAKLAEQAERYDD+AAAMK+VTE
Sbjct: 1 MSDTVEELVQRAKLAEQAERYDDMAAAMKKVTE 33
>U05038-1|AAA61872.1| 248|Caenorhabditis elegans 14-3-3 protein
protein.
Length = 248
Score = 56.4 bits (130), Expect = 3e-09
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +3
Query: 135 MSVDKEELVQRAKLAEQAERYDDLAAAMKEVTE 233
MS EELVQRAKLAEQAERYDD+AAAMK+VTE
Sbjct: 1 MSDTVEELVQRAKLAEQAERYDDMAAAMKKVTE 33
>Z66564-5|CAC42300.2| 198|Caenorhabditis elegans Hypothetical
protein F52D10.3b protein.
Length = 198
Score = 56.0 bits (129), Expect = 3e-09
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = +3
Query: 135 MSVDKEELVQRAKLAEQAERYDDLAAAMKEVTE 233
MS KEELV RAKLAEQAERYDD+AA+MK+VTE
Sbjct: 1 MSDGKEELVNRAKLAEQAERYDDMAASMKKVTE 33
>Z66564-2|CAA91474.1| 248|Caenorhabditis elegans Hypothetical
protein F52D10.3a protein.
Length = 248
Score = 56.0 bits (129), Expect = 3e-09
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = +3
Query: 135 MSVDKEELVQRAKLAEQAERYDDLAAAMKEVTE 233
MS KEELV RAKLAEQAERYDD+AA+MK+VTE
Sbjct: 1 MSDGKEELVNRAKLAEQAERYDDMAASMKKVTE 33
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 28.3 bits (60), Expect = 0.77
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 210 PPGHHIVQPAQPTWRVVLVPPYRRTSWTMEDIDFTDALV 94
P GHH++ P Q R L+ + D+DF D V
Sbjct: 427 PLGHHLICPVQRVMRYQLLLQEYKKHLQPSDVDFDDTTV 465
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 28.3 bits (60), Expect = 0.77
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 210 PPGHHIVQPAQPTWRVVLVPPYRRTSWTMEDIDFTDALV 94
P GHH++ P Q R L+ + D+DF D V
Sbjct: 427 PLGHHLICPVQRVMRYQLLLQEYKKHLQPSDVDFDDTTV 465
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 28.3 bits (60), Expect = 0.77
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 210 PPGHHIVQPAQPTWRVVLVPPYRRTSWTMEDIDFTDALV 94
P GHH++ P Q R L+ + D+DF D V
Sbjct: 427 PLGHHLICPVQRVMRYQLLLQEYKKHLQPSDVDFDDTTV 465
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 28.3 bits (60), Expect = 0.77
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 210 PPGHHIVQPAQPTWRVVLVPPYRRTSWTMEDIDFTDALV 94
P GHH++ P Q R L+ + D+DF D V
Sbjct: 427 PLGHHLICPVQRVMRYQLLLQEYKKHLQPSDVDFDDTTV 465
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 28.3 bits (60), Expect = 0.77
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 210 PPGHHIVQPAQPTWRVVLVPPYRRTSWTMEDIDFTDALV 94
P GHH++ P Q R L+ + D+DF D V
Sbjct: 427 PLGHHLICPVQRVMRYQLLLQEYKKHLQPSDVDFDDTTV 465
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 228 SLPSSRPPGHHIVQPAQPTWRV 163
+LP+ PPG + P QPT +V
Sbjct: 547 ALPAGLPPGFEVTGPPQPTPQV 568
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 228 SLPSSRPPGHHIVQPAQPTWRV 163
+LP+ PPG + P QPT +V
Sbjct: 547 ALPAGLPPGFEVTGPPQPTPQV 568
>U42436-4|AAF99896.2| 297|Caenorhabditis elegans Hypothetical
protein C49H3.9 protein.
Length = 297
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 124 HRPRCPSIRRN*YNAPSWLSRLNDMM 201
H CP I + + PSW S LN ++
Sbjct: 233 HERWCPRIEMDDHGEPSWQSDLNTVL 258
>U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical
protein C29H12.5 protein.
Length = 706
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 121 FHRPRCPSIRRN*YNAPSWLSRLNDMMTWRP 213
F R + P + N + WL N MTW P
Sbjct: 81 FKRTKKPQLISNYFFLVKWLGYGNKEMTWEP 111
>Z83232-4|CAB05756.2| 891|Caenorhabditis elegans Hypothetical
protein K04B12.3 protein.
Length = 891
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 41 EKPKKFCNLLVNYRFTLPTRASVKSISSIV 130
EKPKKFC + ++++ L + I S+V
Sbjct: 389 EKPKKFC-IFISFQNVLQFNEATHYIDSVV 417
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,312,913
Number of Sequences: 27780
Number of extensions: 90719
Number of successful extensions: 281
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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