Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A24
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   6.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.9  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   6.9  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   9.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   9.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   9.1  

>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +1

Query: 307 CQDGEITEKLCPDGMVFNDYNPQDEKCDLPFNIDCSQRP 423
           C+  + TE++  D +V+N+  P D+  ++  + D  ++P
Sbjct: 376 CESYKFTERIQLDSLVYNELAPGDQLVNMGVD-DFEEKP 413


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 362 SLNTIPSGHSFSVISPSWHA*YLSHCSASAKKPSSGHELVISASFSLSS 216
           S ++I S  S S  SP+  +  +S  S+S+  P+S    + S+S S SS
Sbjct: 268 SSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSS 316


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 418 RPKLQTPIPSLHC-PRKNGYFSHE 486
           RP LQ P+P LH  P ++  +S E
Sbjct: 821 RPNLQKPLPQLHIEPSRDEQYSME 844


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 187 KPANPPARVIEESEKDAEITSSCPED 264
           KP    +  IE++E DAE+     ED
Sbjct: 28  KPVTKMSSYIEDAESDAELPQDAKED 53


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 190 PANPPARVIEESEKDAEITSSCPEDGFFADA 282
           P+NP A     S  D+ IT++   DG   D+
Sbjct: 90  PSNPTAHSPSSSSNDSVITATGVPDGILRDS 120


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 68   VTDRLVFQNKTRWRL 112
            +T R + +NKTRW L
Sbjct: 2259 ITSRFIVRNKTRWSL 2273


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
 Frame = +1

Query: 190 PANPPARVIEE-SEKDAEITSSCPEDGFFA-----DAEQCDK-----YYACQDGEITEKL 336
           P+  P+ V    SE   +I+S  P  G  A      ++  DK     YY  ++   T   
Sbjct: 431 PSMQPSAVSSPMSESHVQISSEMPRTGMSALPMRPRSQNVDKHRKFPYYNKRNAVTTPSS 490

Query: 337 CPDGMVFNDYNPQDEKCDLP-FNIDCSQRPKLQTPIPS 447
             DG      +PQ    +LP  N   +Q P L TP PS
Sbjct: 491 PYDGA--QSGSPQFPPFELPPHNYSQAQSPNLATPSPS 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,685
Number of Sequences: 5004
Number of extensions: 39973
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)