Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A23
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   3.1  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   3.1  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.1  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    24   7.2  
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    24   7.2  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    24   9.6  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    24   9.6  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    24   9.6  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   9.6  

>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 114 SRCDESPVHMTRTRDGDSSPPTELLPRCERVSEHRPS 4
           S+CD        + DG S  P + LP C  ++E  PS
Sbjct: 364 SQCDVGITPNQSSYDGISYLPGQKLPNCVCLNEDHPS 400


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 195 GSNQA*VISSDPMFVRHNYN*NAYKKSSRCDESPVHMTRTRDGDSSPP 52
           G N +  I+S P   RH +N +   +S+  + SP+        D S P
Sbjct: 359 GKNNSSSITSSPSKSRHAFNSDQISESNNFNASPLSTPLKAQFDPSKP 406


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 137 IKMHIKNRLGVTSHRCT*H 81
           + +HI  +LGV S+ CT H
Sbjct: 24  VSLHIVKQLGVESYACTVH 42


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 306 PSCRCSRTPRCWCSPAPSRSGSTRTC 383
           P   C R  RC+C P      S  +C
Sbjct: 332 PLLHCPRKGRCFCKPEEIDLSSNSSC 357


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 147 HNYN*NAYKKSSRCDESPVHMTRTRDGDSSPPTELLPRCERVSEH 13
           HN N N YK  +  + +   +   R  +  P   LLP  E + EH
Sbjct: 154 HNPNHNVYKSQAYYELTGAWLVVLRQLEDRPVVPLLP-LEELEEH 197


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 129 HFNCNCVGQTWDLMISLMPGSTRSGCTL 212
           H N N  G   DL+ + +P + R+G T+
Sbjct: 403 HLNQNSFGDLLDLLYASLPCTDRAGRTV 430


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 125  IKNRLGVTSHRCT*HGRVTATVRLRLNSCRAVSE*ASTDP 6
            +KN     S   T H      + L  + CR  S+ +S+DP
Sbjct: 1404 LKNPCATISKAVTQHNAYNKKLSLLFDICRGCSKLSSSDP 1443


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 17  SLTRSQRGRSSVGGELSPSRVRVMCTG 97
           S  +   G  +V GE+ P  VRV+C G
Sbjct: 676 SKAKEINGLRAVFGEVYPDPVRVVCIG 702


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -3

Query: 228 INDSTSGCSRCGSNQA*VISSDPMFVRHNYN*NAYKKSSRCDESPVHMTRTRDGDSSPPT 49
           +  S  G    G N+  V  S P   +++ N +  + SSR D++ V    T +   S   
Sbjct: 109 VEQSWIGYKYLGGNRIKVDDSSPKLKQNSNNISKKQNSSRNDDTKVKKDTTIERPESLVV 168

Query: 48  ELL 40
           E++
Sbjct: 169 EIV 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,178,454
Number of Sequences: 5004
Number of extensions: 17801
Number of successful extensions: 42
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)