Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A21
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   5.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   5.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   5.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   10.0 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   10.0 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   10.0 

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 361 KYSYQPMYNLNQHNTIQPTNKFNFLISV 278
           KY+Y   YN N +N  +     N++I++
Sbjct: 97  KYNYNNKYNYNNNNYNKKLYYKNYIINI 124


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 139 RIINNSFEFKDIYITIIYA 83
           +IINN F F D+   I+ A
Sbjct: 390 KIINNDFNFNDVNFRILGA 408


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 139 RIINNSFEFKDIYITIIYA 83
           +++NN F F D+   I+ A
Sbjct: 387 KMVNNDFNFDDVNFRIMNA 405


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 139 RIINNSFEFKDIYITIIYA 83
           +++NN F F D+   I+ A
Sbjct: 387 KMVNNDFNFDDVNFRIMNA 405


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 139 RIINNSFEFKDIYITIIYA 83
           +++NN F F D+   I+ A
Sbjct: 387 KMVNNDFNFDDVNFRIMNA 405


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 139 RIINNSFEFKDIYITIIYA 83
           +I+NN F F ++   I+ A
Sbjct: 388 KIVNNDFNFDEVNFRILGA 406


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 171 FETNRKN*IESYKKK 215
           FE NR   +ES+K+K
Sbjct: 291 FERNRLQLLESFKRK 305


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 253 LCNCKKYEH 227
           L NCK Y+H
Sbjct: 32  LLNCKNYDH 40


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 87  YIIVIYISLNSKELL 131
           Y I +YIS + KEL+
Sbjct: 247 YAIFLYISWHQKELV 261


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 139 RIINNSFEFKDIYITIIYA 83
           +I+N+ F F D+   I+ A
Sbjct: 385 KIVNDDFNFDDVNFRILGA 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,563
Number of Sequences: 438
Number of extensions: 1404
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)