Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A20
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   0.54 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   2.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   2.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.0  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +2

Query: 71  INSEYTKYLQTEYEAATSYKPEVSYYQEQWSTMTSAPNAVEIWDTGVDASVLKLVGEASV 250
           ++S    Y+ TE    + Y+    +YQ + + + +  +A  I D GV      LVG+ S+
Sbjct: 268 LSSHNLNYVNTEQFVKSQYQANNVHYQGKENILWTQASAKGISDNGV--LFFGLVGDTSL 325


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 160 PLFLVIRYLWFI 125
           PLFL+I   WFI
Sbjct: 228 PLFLIIYSYWFI 239


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 160 PLFLVIRYLWFI 125
           PLFL+I   WFI
Sbjct: 104 PLFLIIYSYWFI 115


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 123 DVAASYSVCRYLVYSELILFTSSFVKMPSDINLSVY 16
           D   S   C Y V + +    S F+    D NL+VY
Sbjct: 554 DYNESEEQCPYTVDAAIYGNISHFINHSCDPNLAVY 589


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,761
Number of Sequences: 438
Number of extensions: 1767
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)