Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A19
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    23   5.3  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    23   7.1  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    23   7.1  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    22   9.3  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    22   9.3  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    22   9.3  

>SPAC922.05c |||membrane transporter |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 504

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 84 DYNELEALEFNSPSWLYR 31
          +Y E+E    +  SW+YR
Sbjct: 27 EYGEVETAPLSQSSWIYR 44


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 78  NELEALEFNSPSWLYR 31
           N +EA++ NSP ++YR
Sbjct: 147 NFVEAIDANSPGFVYR 162


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 132 YNR-ITHLLNTDHVISIDYNELEALEFNSPS 43
           YN+ +  + ++  V+  DY  +EAL+ NSPS
Sbjct: 868 YNQNMQSMSDSKSVVIEDYMLMEALKKNSPS 898


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 129 NRITHLLNTDHVISIDYNELEALEF 55
           N+ITH++N     S+D + ++ L F
Sbjct: 89  NKITHIINFAAESSVDRSFIDPLYF 113


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 105 TDHVISIDYNELEAL 61
           T H  SIDY ++EAL
Sbjct: 269 TPHHCSIDYEKMEAL 283


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 114 LLNTDHVISIDYNELEAL 61
           +++TDH I +   E+EAL
Sbjct: 123 IIHTDHSIEVIITEMEAL 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,886
Number of Sequences: 5004
Number of extensions: 10375
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)