Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A18
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.14 
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   7.2  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    24   9.5  

>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 146 CRRISKKKNKRLYLVKESGYLLFNPNPLRFSLMYVLFLFIIYYYCNP 6
           C  I  KK++R      S   L NPN  +FS+   ++ F   + C+P
Sbjct: 50  CPEIKNKKSRRKNQRNSSSIGLSNPN--KFSIYIYIYFFFYSFLCSP 94


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 378 KRLTLRYNVTACTKIYC 428
           K +TLR  V  C KIYC
Sbjct: 192 KTMTLREIVETCEKIYC 208


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 90  PTFLYKVETFVFFFAYSSACLL 155
           P   Y VETF FF  +  AC L
Sbjct: 27  PLATYLVETFCFFRRWKIACTL 48


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -3

Query: 424  YILVHAVTLYLSVSRFTV---S*CMWLHYILVYAVTLYLSVSR 305
            Y+L+ A  +  S+   T+   + C  L+Y +V+ + +YLS +R
Sbjct: 1485 YLLLKAYAMGTSLEELTIPESAKCSPLNYRVVWQLAIYLSKAR 1527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,230
Number of Sequences: 5004
Number of extensions: 26765
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)