Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_A18
(453 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 23 1.6
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 2.7
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 21 8.3
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 21 8.3
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 8.3
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 8.3
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 8.3
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 21 8.3
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 21 8.3
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 21 8.3
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 21 8.3
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 8.3
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 8.3
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 8.3
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.0 bits (47), Expect = 1.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 229 VKNFDQDTKRRTLKYSEATYTK 294
++NF DT+R L++ YTK
Sbjct: 134 LENFPMDTQRCPLQFGSFGYTK 155
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.2 bits (45), Expect = 2.7
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 349 YILVYAVTLYLSVSRFNVS*CMSLHCILVYVA*YLDRNF*QLLTESISWLIA 194
YI++ TL+ +V+ + +S C+LV+ YL + +T IS L++
Sbjct: 226 YIIIRRKTLFYTVNLILPTVLISFLCVLVF---YLPAEAGEKVTLGISILLS 274
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 66 WIRIK*QIPTFLY 104
WI I+ QIP F Y
Sbjct: 137 WISIQEQIPRFRY 149
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 66 WIRIK*QIPTFLY 104
WI I+ QIP F Y
Sbjct: 137 WISIQEQIPRFRY 149
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 66 WIRIK*QIPTFLY 104
WI I+ QIP F Y
Sbjct: 354 WISIQEQIPRFRY 366
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 66 WIRIK*QIPTFLY 104
WI I+ QIP F Y
Sbjct: 365 WISIQEQIPRFRY 377
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 66 WIRIK*QIPTFLY 104
WI I+ QIP F Y
Sbjct: 383 WISIQEQIPRFRY 395
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 66 WIRIK*QIPTFLY 104
WI I+ QIP F Y
Sbjct: 353 WISIQEQIPRFRY 365
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 66 WIRIK*QIPTFLY 104
WI I+ QIP F Y
Sbjct: 364 WISIQEQIPRFRY 376
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 66 WIRIK*QIPTFLY 104
WI I+ QIP F Y
Sbjct: 364 WISIQEQIPRFRY 376
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 66 WIRIK*QIPTFLY 104
WI I+ QIP F Y
Sbjct: 353 WISIQEQIPRFRY 365
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 66 WIRIK*QIPTFLY 104
WI I+ QIP F Y
Sbjct: 375 WISIQEQIPRFRY 387
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 20.6 bits (41), Expect = 8.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 66 WIRIK*QIPTFLY 104
WI I+ QIP F Y
Sbjct: 385 WISIQEQIPRFRY 397
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 20.6 bits (41), Expect = 8.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 89 YLLFNPNPLRFSLMYVL 39
YLLF PLR S VL
Sbjct: 141 YLLFATLPLRLSFCVVL 157
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,010
Number of Sequences: 438
Number of extensions: 2087
Number of successful extensions: 22
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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