Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A15
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.1  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   8.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 18/62 (29%), Positives = 22/62 (35%)
 Frame = +2

Query: 56   RQNLRFQRQEVDNGNNAGEAPYAPAGFRPAKEFKLPSRQETAPPSTSYGVPDDSYGAPLK 235
            RQN R+ R     G +     ++P    PA           AP    YG     YGAP  
Sbjct: 1782 RQNGRYSRVPSQGGGSGTHNVFSPEYDDPAN---------CAPEEDQYGSQYGQYGAPYD 1832

Query: 236  TY 241
             Y
Sbjct: 1833 HY 1834



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +2

Query: 209  DDSYGAPLKTYLAPQTEYGVPEKTPDTEYGVPRDAP 316
            +D YG+    Y AP   YG          G  R+ P
Sbjct: 1817 EDQYGSQYGQYGAPYDHYGSRGSVGRRSVGSARNIP 1852


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 245 APQTEYGVPEKTPDTEYGVPRDAPRG 322
           APQ  Y + E  P     +P D P G
Sbjct: 409 APQNFYYIEEYLPGNGVIIPDDPPIG 434


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 524 YLHSCIGDGPCTP 486
           Y++  +  GPCTP
Sbjct: 46  YVNCLLDQGPCTP 58


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 267 SRKRLLIRNTVYHVTHHEAMMMKT*KLKVSRRIS 368
           +  RLL R  +  V  ++  +     LKV RRIS
Sbjct: 329 NENRLLDRRNIEVVAKNKETLQAITGLKVKRRIS 362


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 140 PAKEFKLPSRQETAPPSTSYGVPDDSYGAPLKT 238
           P +  K+PS      P + +  PD    AP KT
Sbjct: 642 PKRIRKMPSMPLLPRPISCHTTPDSFIEAPNKT 674


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 524 YLHSCIGDGPCTP 486
           Y++  +  GPCTP
Sbjct: 46  YVNCLLDQGPCTP 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,160
Number of Sequences: 438
Number of extensions: 3065
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)