Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A10
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   1.8  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   1.8  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    23   4.2  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    23   5.6  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    22   9.8  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 127 LQLILVKWRRCLSINSLYVDVT 192
           LQL+L    +CL +N+L+ D T
Sbjct: 573 LQLLLCYLEQCLRLNTLHEDTT 594


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
            Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 13   LAALVESTCVEWGISQCGICLLPCLYLFNNYRDAIK 120
            L  LVE+  + W I+   + + P +Y+    RD  K
Sbjct: 931  LHTLVENKFLAWAIALAAVSVFPTIYIPVINRDVFK 966


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -3

Query: 94  KDTNTEANIYHTDLFPTQHKSIR 26
           K+TN++++  H++ +  +H SIR
Sbjct: 118 KETNSKSSTLHSNPYCPEHHSIR 140


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 105 SRCNQNCFATHPSKMASVFIN*LP 176
           S    NCF+THP  +     N +P
Sbjct: 145 SNGTNNCFSTHPKSLDDAKDNVVP 168


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 161 KHRRHFT-RMSCKTILIASR*LLKRYKHGSKHIPH*LIPHST 39
           K+R+++      + ++ A + LL+  KH +K   + +IP ST
Sbjct: 38  KNRQYYILEKKIRKLMFAMKALLEETKHSTKDDVNLVIPGST 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 769,127
Number of Sequences: 5004
Number of extensions: 11136
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)