Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A05
         (82 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   0.77 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   0.77 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   1.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   1.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   2.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    20   2.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   2.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    19   7.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   7.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   7.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 0.77
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 78  WLNTVSLWLGH 46
           WL  ++LWL H
Sbjct: 654 WLQVLALWLNH 664


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 0.77
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 78  WLNTVSLWLGHCTRAQN 28
           +L+++ LWLG+C    N
Sbjct: 407 FLSSLFLWLGYCNSLLN 423


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 69 TVSLWLGHCTRAQN 28
          +V  WLG+C  A N
Sbjct: 45 SVLFWLGYCNSAIN 58


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 69  TVSLWLGHCTRAQN 28
           +V  WLG+C  A N
Sbjct: 493 SVLFWLGYCNSAIN 506


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 78  WLNTVSLWLGHCTRAQNFTAAHGGST 1
           W  T+S       R +    AHGGS+
Sbjct: 402 WRETISSTATLGFRVEGIKLAHGGSS 427


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 78  WLNTVSLWLGHCTRAQNFTAAHGGST 1
           W  T+S       R +    AHGGS+
Sbjct: 317 WRETISSTATLGFRVEGIKLAHGGSS 342


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 78  WLNTVSLWLGHCTRAQNFTAAHGGST 1
           W  T+S       R +    AHGGS+
Sbjct: 636 WRETISSTATLGFRVEGIKLAHGGSS 661


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 4/9 (44%), Positives = 6/9 (66%)
 Frame = -1

Query: 52  WALHSCTEF 26
           W +H C+ F
Sbjct: 79  WVIHPCSSF 87


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 4/9 (44%), Positives = 6/9 (66%)
 Frame = -1

Query: 52  WALHSCTEF 26
           W +H C+ F
Sbjct: 79  WVIHPCSSF 87


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 4/9 (44%), Positives = 6/9 (66%)
 Frame = -1

Query: 52  WALHSCTEF 26
           W +H C+ F
Sbjct: 79  WVIHPCSSF 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,567
Number of Sequences: 438
Number of extensions: 203
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 8
effective length of database: 142,839
effective search space used:  2571102
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)