Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A04
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    28   0.57 
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   5.3  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    24   7.0  
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    24   7.0  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    24   7.0  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    24   9.3  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    24   9.3  

>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 210 TETYFRYRCLVYLRNIINISKTHADNQNYGTELN 109
           T  Y    C  Y+ +  N  K H  NQ YGTE++
Sbjct: 313 TGIYVLLLCCYYIFDTCNGQKNHFRNQIYGTEVH 346


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 318 SFASISPVRPCDMEQTASVAF 256
           S   + PVRP  +E+T  VAF
Sbjct: 76  SLPKLKPVRPFQLEKTVFVAF 96


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 211 CICQAVSG-CKQGTKCEGDACGLFHITWPY 297
           C+ + ++G C  G + E +  G    TWPY
Sbjct: 132 CVVRELTGGCYFGERTEDNGSGYAMDTWPY 161


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 200 YVSVASARLCLAASKALSVKATLAVC 277
           YV+V    +C AA K L +KA    C
Sbjct: 268 YVTVEPCLMCAAALKQLHIKAVYFGC 293


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 34  PFFISIFNYYFILNIF*SVIMASAVIKFSAIILIVGVCLADVYDVPQVNQ-APVTEVCLG 210
           P+F  +  YY I+  F SVI A  +     ++LI+ V   +      +N+ +   E+  G
Sbjct: 276 PYFSRL--YYSIILTFVSVIAAFTIGIIQMLMLIISVHPMESTFWNGLNRLSDNYEIVGG 333

Query: 211 CICQA 225
           CIC A
Sbjct: 334 CICGA 338


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 91  IMASAVIKFSAIILIVGVCLADVYDVPQVNQAPVT 195
           ++  A +   A I    VC+A  YD  ++N+ PVT
Sbjct: 200 VIPEAKLAREAEIAYQMVCMATDYDCWRMNEEPVT 234


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 175 VNQAPVTEVCLGCICQ 222
           VN +PV  + L C+CQ
Sbjct: 92  VNSSPVYSLFLACVCQ 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,568,105
Number of Sequences: 5004
Number of extensions: 30520
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)