Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_A04
(382 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08418-1|CAA69695.1| 503|Homo sapiens nicotinic acetylcholine r... 29 6.6
X53559-1|CAA37625.1| 474|Homo sapiens neuronal nicotinic acetyl... 29 6.6
U62432-1|AAB40110.1| 504|Homo sapiens nicotinic acetylcholine r... 29 6.6
M86383-1|AAC84176.1| 502|Homo sapiens nicotinic acetylcholine r... 29 6.6
M37981-1|AAA59942.1| 503|Homo sapiens neuronal nicotinic acetyl... 29 6.6
BT006897-1|AAP35543.1| 505|Homo sapiens cholinergic receptor, n... 29 6.6
BT006646-1|AAP35292.1| 489|Homo sapiens cholinergic receptor, n... 29 6.6
BC098443-1|AAH98443.1| 504|Homo sapiens cholinergic receptor, n... 29 6.6
BC041175-1|AAH41175.1| 434|Homo sapiens transcription factor AP... 29 6.6
BC006114-1|AAH06114.1| 489|Homo sapiens CHRNA3 protein protein. 29 6.6
BC002996-1|AAH02996.1| 505|Homo sapiens cholinergic receptor, n... 29 6.6
BC001642-1|AAH01642.1| 505|Homo sapiens cholinergic receptor, n... 29 6.6
BC000513-1|AAH00513.1| 505|Homo sapiens cholinergic receptor, n... 29 6.6
AY326454-1|AAQ91614.1| 442|Homo sapiens transcription factor AP... 29 6.6
AL157951-1|CAI23520.1| 442|Homo sapiens transcription factor AP... 29 6.6
AJ007783-1|CAA07682.1| 504|Homo sapiens nicotinic acetylcholine... 29 6.6
AF385584-1|AAK68110.1| 489|Homo sapiens nicotinic cholinergic r... 29 6.6
AB209128-1|BAD92365.1| 295|Homo sapiens serum response factor (... 29 6.6
AY393551-1|AAR32601.1| 164|Homo sapiens immunoglobulin heavy ch... 28 8.7
AY392861-1|AAS85804.1| 131|Homo sapiens immunoglobulin heavy ch... 28 8.7
AK093809-1|BAC04227.1| 516|Homo sapiens protein ( Homo sapiens ... 28 8.7
>Y08418-1|CAA69695.1| 503|Homo sapiens nicotinic acetylcholine
receptor alpha3 subunit precursor protein.
Length = 503
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 378 LNCFSRAESKGCKEGYPCQDGMCGYCH 404
>X53559-1|CAA37625.1| 474|Homo sapiens neuronal nicotinic
acetylcholine receptor alpha-3merase protein.
Length = 474
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 349 LNCFSRAESKGCKEGYPCQDGMCGYCH 375
>U62432-1|AAB40110.1| 504|Homo sapiens nicotinic acetylcholine
receptor alpha3 subunit precursor protein.
Length = 504
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 379 LNCFSRAESKGCKEGYPCQDGMCGYCH 405
>M86383-1|AAC84176.1| 502|Homo sapiens nicotinic acetylcholine
receptor alpha 3 subunit precursor protein.
Length = 502
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 377 LNCFSRAESKGCKEGYPCQDGMCGYCH 403
>M37981-1|AAA59942.1| 503|Homo sapiens neuronal nicotinic
acetylcholine receptor protein.
Length = 503
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 378 LNCFSRAESKGCKEGYPCQDGMCGYCH 404
>BT006897-1|AAP35543.1| 505|Homo sapiens cholinergic receptor,
nicotinic, alpha polypeptide 3 protein.
Length = 505
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406
>BT006646-1|AAP35292.1| 489|Homo sapiens cholinergic receptor,
nicotinic, alpha polypeptide 3 protein.
Length = 489
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406
>BC098443-1|AAH98443.1| 504|Homo sapiens cholinergic receptor,
nicotinic, alpha 3 protein.
Length = 504
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 379 LNCFSRAESKGCKEGYPCQDGMCGYCH 405
>BC041175-1|AAH41175.1| 434|Homo sapiens transcription factor AP-2
epsilon (activating enhancer binding protein 2 epsilo
protein.
Length = 434
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 328 GQSPDAPDAYPN*ANDPY 381
GQ+PDA A+P+ A DPY
Sbjct: 59 GQAPDAAAAFPHLAGDPY 76
>BC006114-1|AAH06114.1| 489|Homo sapiens CHRNA3 protein protein.
Length = 489
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406
>BC002996-1|AAH02996.1| 505|Homo sapiens cholinergic receptor,
nicotinic, alpha 3 protein.
Length = 505
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406
>BC001642-1|AAH01642.1| 505|Homo sapiens cholinergic receptor,
nicotinic, alpha 3 protein.
Length = 505
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406
>BC000513-1|AAH00513.1| 505|Homo sapiens cholinergic receptor,
nicotinic, alpha 3 protein.
Length = 505
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 380 LNCFSRAESKGCKEGYPCQDGMCGYCH 406
>AY326454-1|AAQ91614.1| 442|Homo sapiens transcription factor AP-2
epsilon protein.
Length = 442
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 328 GQSPDAPDAYPN*ANDPY 381
GQ+PDA A+P+ A DPY
Sbjct: 67 GQAPDAAAAFPHLAGDPY 84
>AL157951-1|CAI23520.1| 442|Homo sapiens transcription factor AP-2
epsilon (activating enhancer binding protein 2 epsilo
protein.
Length = 442
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 328 GQSPDAPDAYPN*ANDPY 381
GQ+PDA A+P+ A DPY
Sbjct: 67 GQAPDAAAAFPHLAGDPY 84
>AJ007783-1|CAA07682.1| 504|Homo sapiens nicotinic acetylcholine
receptor alpha-3 subunit protein.
Length = 504
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 379 LNCFSRAESKGCKEGYPCQDGMCGYCH 405
>AF385584-1|AAK68110.1| 489|Homo sapiens nicotinic cholinergic
receptor alpha 3 protein.
Length = 489
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 205 LGCICQAVS-GCKQGTKCEGDACGLFH 282
L C +A S GCK+G C+ CG H
Sbjct: 374 LNCFSRAESKGCKEGYPCQDGMCGYCH 400
>AB209128-1|BAD92365.1| 295|Homo sapiens serum response factor
(c-fos serum response element-binding transcription
facto protein.
Length = 295
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 160 YDVPQVNQAPVTEVCLGCICQAVSG 234
Y V + + + T+VCLGC+C+ G
Sbjct: 258 YQVSESDSSGETKVCLGCLCERREG 282
>AY393551-1|AAR32601.1| 164|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 164
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/61 (26%), Positives = 22/61 (36%)
Frame = +1
Query: 178 NQAPVTEVCLGCICQAVSGCKQGTKCEGDACGLFHITWPYWADTGKATLNGQSPDAPDAY 357
N PV C +V C+ T+C FH W T++ S AP +
Sbjct: 74 NMDPVDTATYYCARISVEDCRS-TRCHSRFRYYFHYGMDVWGQGTTVTVSSGSASAPTLF 132
Query: 358 P 360
P
Sbjct: 133 P 133
>AY392861-1|AAS85804.1| 131|Homo sapiens immunoglobulin heavy chain
protein.
Length = 131
Score = 28.3 bits (60), Expect = 8.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 283 ITWPYWADTGKATLNGQSPDAPDAYP 360
I+W YW T++ SP +P +P
Sbjct: 103 ISWDYWGQGTLVTVSSASPTSPKVFP 128
>AK093809-1|BAC04227.1| 516|Homo sapiens protein ( Homo sapiens
cDNA FLJ36490 fis, clone THYMU2018189. ).
Length = 516
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 329 PFNVALPVSAQYGHVIWNKPQASPSHLVP 243
P ++ALP + +YG + W +SP+H +P
Sbjct: 478 PGSLALPSTPEYGALGWRGYVSSPAHSLP 506
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,003,418
Number of Sequences: 237096
Number of extensions: 1126706
Number of successful extensions: 2326
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2326
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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