Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_A02
(239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 28 0.14
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 0.58
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 0.58
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 2.3
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 24 3.1
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 24 3.1
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 24 3.1
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 23 4.1
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 23 4.1
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 23 4.1
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 23 4.1
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr... 23 5.4
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha... 23 7.1
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 22 9.4
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 22 9.4
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 22 9.4
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 28.3 bits (60), Expect = 0.14
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 89 LLITVTSYHVCADTCAI*NLQP*HDTENLIFSVHKDLQKSSQVFLIPDAL 238
LL+ V S+H D CA P T L+ ++HK +K L+P +
Sbjct: 137 LLLNVESHHKVLDMCA----APGSKTAQLLEALHKPTKKEDITTLLPSGI 182
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 26.2 bits (55), Expect = 0.58
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 37 ETLKLPSDFFLASSVAEVTDYSDFLSRLRRYMCNLKPTTVTRH 165
E L +P D + SVAEV + + +R C LK + + H
Sbjct: 61 ELLDIPKDKIIGHSVAEVLGTDGYNAFMRAVNCLLKDDSHSYH 103
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.2 bits (55), Expect = 0.58
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 58 DFFLASSVAEVTDYSDFLSRLR--RYMCNLKPTTVTRHGKSNILCS*GSTKIIS 213
D+FL+ SV E DY +S LR R T V + +++C GS K IS
Sbjct: 630 DYFLSLSVIEDADYQICVSSLRLLREFTRFAATDVWAYVTRSLVCV-GSEKGIS 682
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 200 VDPYEQRILDFPCRVTVVGFKLHM 129
+DP E +LDFP +T+ G +L +
Sbjct: 1893 LDPLEVHLLDFP-NITIKGSELQL 1915
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 49 LPSDFFLASSVAEVTDYSDFLSRLRRY 129
LP D F+ + EV F R+R+Y
Sbjct: 200 LPKDTFVYEYIGEVIPEQKFRKRMRQY 226
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 92 VTSATDDARKKSLGSFKVSPYTSSAEEL 9
+ + T + R K G+FK+ YT + L
Sbjct: 233 IYTRTSEPRPKPAGTFKIHAYTEGGKPL 260
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 76 SVAEVTDYSDFLSRLRRYMCNLKPTTVTRHGKSN 177
++ V D S S+ +Y+CN P + GK++
Sbjct: 471 NICIVGDPSTSKSQFLKYVCNFLPRAIYTSGKAS 504
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 5 EEVPQQSL-YMEKL*SSLAIFSLRHRLQKLLITVTSY 112
E++P + + +ME L +L F R + QK+L T+ +
Sbjct: 333 EKLPSEKVSFMESLSKNLTTFPYRIQSQKILPTLLDH 369
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 147 YNRNTTRKI*YSLFIRIYKNHL 212
YN N+T+KI S +R++ N +
Sbjct: 411 YNVNSTKKIKVSRLVRMHSNDM 432
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 164 CRVTVVGFKLHMYRRRRDK 108
CR V G+K +Y ++ DK
Sbjct: 1407 CRTRVTGYKRKIYGKKADK 1425
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 133 TCIGADVIRSHCNQ 92
TC G ++ SHCN+
Sbjct: 101 TCPGLSIVYSHCNR 114
>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 115
Score = 23.0 bits (47), Expect = 5.4
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 209 MIFVDPYEQRILDFPCRVTVVGFKLHMYRRRRDKKSL*SVTSATDDARK 63
+IFV + + +F + LH+YRR R++ S T T R+
Sbjct: 67 LIFVTNFITSLPNFQFPLFFFVSLLHLYRRPRNQISTRKYTPHTQSGRR 115
>SPBC20F10.06 |mad2||spindle checkpoint protein
Mad2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 29 YMEKL*SSLAIFSLRHRLQKLLITVTS 109
Y+ K+ S L + ++QKL++ +TS
Sbjct: 63 YIRKIVSQLHKWMFAKKIQKLILVITS 89
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = +1
Query: 103 DFLSRLRRYMCNLKPTTVTRHGKSNILCS 189
DFL R +C+++ T ++ LC+
Sbjct: 219 DFLKHHERNLCSIEKQTTLKNSSLKELCT 247
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 142 SNCTCIGADVIRSHC 98
+N IG D+IR HC
Sbjct: 282 ANMHVIGKDIIRFHC 296
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 79 VAEVTDYSDFLSRLRRYMCNLKPTTVTRHGKSNILCS 189
+AEVT ++L + +LKP + H +I+ S
Sbjct: 301 IAEVTAALEYLHLMGFIYRDLKPENILLHESGHIMLS 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 942,546
Number of Sequences: 5004
Number of extensions: 15600
Number of successful extensions: 41
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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