Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A02
         (239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213           29   0.40 
03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,256...    29   0.69 
01_06_1685 + 39170428-39171735                                         26   3.7  
09_06_0364 + 22554082-22554225,22554306-22554520,22554671-225547...    26   4.9  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    26   4.9  
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718     25   8.5  
08_01_0360 - 3160723-3160821,3160911-3160995,3161099-3161205,316...    25   8.5  

>07_01_0279 + 2055310-2055541,2055916-2056235,2056734-2057213
          Length = 343

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 52  PSDFFLASSVAEVTDYSDFLSRLRRYMCNLKPTTVTRHG 168
           PSDF   S+V    ++  F  R R+Y  +++P  VT  G
Sbjct: 73  PSDFLKTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSG 111


>03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,
            2567166-2567297,2567517-2567567,2567769-2567840,
            2568590-2568680,2568988-2569066,2569147-2569210,
            2569917-2570020,2570182-2570287,2572080-2572157,
            2572649-2572801,2573039-2573128,2573284-2573349,
            2573485-2573583,2573660-2573734,2574455-2574514,
            2574909-2574998,2575202-2575323,2575462-2575591,
            2575662-2575741,2576167-2576302,2577005-2577086,
            2578475-2578620,2578796-2578876,2578994-2579094,
            2579770-2580008,2580100-2580209,2580518-2580646,
            2580728-2580802,2581455-2581586,2582298-2582470,
            2582566-2582688,2582771-2582831,2582910-2583005,
            2583251-2583351,2584014-2584119,2584673-2584786,
            2584888-2584962,2585619-2585711,2585883-2585954,
            2586253-2586338,2586434-2586527,2586596-2586703,
            2586782-2587021
          Length = 1579

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 91   TDYSDFLSRLRRYMCNLKPTTVTRHGKSNI 180
            +DY DF+  L R +C L P  V  + +S I
Sbjct: 1434 SDYEDFIRDLTRQLCRLSPARVDSYFESAI 1463


>01_06_1685 + 39170428-39171735
          Length = 435

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 43  LKLPSDFFLASSVAEVTDYSDFLSRLR 123
           ++LP DFF    +A V D + ++S LR
Sbjct: 355 VELPLDFFKVGDLASVHDLATYISLLR 381


>09_06_0364 +
           22554082-22554225,22554306-22554520,22554671-22554752,
           22554976-22555371,22555553-22556293,22556420-22556551,
           22556981-22557367
          Length = 698

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 117 SAPIHVQFETYNRNTTRKI*YSLFIRI 197
           ++P   QFE Y R TT  I   LF+R+
Sbjct: 85  ASPRQFQFELYKRRTTLLIPRPLFLRL 111


>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 37  ETLKLPSDFFLASSVAEVTDYSDFLSRLRRYMCNLKPTTV 156
           + L L +    AS+V  + D+S FLSRLR +  +   T V
Sbjct: 698 QVLSLQNLGLRASAVEALLDFSSFLSRLRLHPNHTMVTNV 737


>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
          Length = 490

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 142 KPTTVTRHGKSNILCS*GSTKIISG 216
           +P   T HG    LC  G T++I G
Sbjct: 116 EPLMPTFHGAEGFLCDVGDTRVIVG 140


>08_01_0360 -
           3160723-3160821,3160911-3160995,3161099-3161205,
           3163066-3163155,3163265-3163408,3163572-3163622,
           3163735-3163844,3163928-3164123
          Length = 293

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 194 PYEQRILDFPCRVTVVGFKLHMYRRRRDKKSL 99
           P  +RI+ F  R   + F+ H+Y +    KSL
Sbjct: 215 PDSKRIITFANRDDYISFRHHVYEKHGGPKSL 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,712,884
Number of Sequences: 37544
Number of extensions: 89967
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)