Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A02
         (239 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113677-1|AAI13678.1|  566|Homo sapiens beta-1,4-N-acetyl-galac...    28   6.1  
BC113675-1|AAI13676.1|  566|Homo sapiens beta-1,4-N-acetyl-galac...    28   6.1  
AJ517771-1|CAD57149.1|  506|Homo sapiens sda beta-1,4-GalNAc tra...    28   6.1  
AJ517770-1|CAD57148.1|  566|Homo sapiens sda beta-1,4-GalNAc tra...    28   6.1  
AF510036-1|AAM34756.1|  566|Homo sapiens beta-4-N-acetylgalactos...    28   6.1  

>BC113677-1|AAI13678.1|  566|Homo sapiens
           beta-1,4-N-acetyl-galactosaminyl transferase 2 protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 120 APIHVQFETYNRNTTRKI*YSLFIRIYKNHLR 215
           A +   + TY  NT  ++ + L +  +KNHL+
Sbjct: 532 AALEKTYNTYRSNTLTRVQFKLALHYFKNHLQ 563


>BC113675-1|AAI13676.1|  566|Homo sapiens
           beta-1,4-N-acetyl-galactosaminyl transferase 2 protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 120 APIHVQFETYNRNTTRKI*YSLFIRIYKNHLR 215
           A +   + TY  NT  ++ + L +  +KNHL+
Sbjct: 532 AALEKTYNTYRSNTLTRVQFKLALHYFKNHLQ 563


>AJ517771-1|CAD57149.1|  506|Homo sapiens sda beta-1,4-GalNAc
           transferase protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 120 APIHVQFETYNRNTTRKI*YSLFIRIYKNHLR 215
           A +   + TY  NT  ++ + L +  +KNHL+
Sbjct: 472 AALEKTYNTYRSNTLTRVQFKLALHYFKNHLQ 503


>AJ517770-1|CAD57148.1|  566|Homo sapiens sda beta-1,4-GalNAc
           transferase protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 120 APIHVQFETYNRNTTRKI*YSLFIRIYKNHLR 215
           A +   + TY  NT  ++ + L +  +KNHL+
Sbjct: 532 AALEKTYNTYRSNTLTRVQFKLALHYFKNHLQ 563


>AF510036-1|AAM34756.1|  566|Homo sapiens
           beta-4-N-acetylgalactosaminyltransferase protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 120 APIHVQFETYNRNTTRKI*YSLFIRIYKNHLR 215
           A +   + TY  NT  ++ + L +  +KNHL+
Sbjct: 532 AALEKTYNTYRSNTLTRVQFKLALHYFKNHLQ 563


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,942,072
Number of Sequences: 237096
Number of extensions: 494334
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 76,859,062
effective HSP length: 58
effective length of database: 63,107,494
effective search space used: 1325257374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)