Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A02
         (239 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    25   7.2  

>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
           protein C35A5.8 protein.
          Length = 1078

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 37  ETLKLPSDFFLASSVAEVTDYSDFLSRLRRYMCNLKPTTVTRHGKSNIL 183
           +T+K  + F+ A +    TDYSD    L+R+   L+P T T  G   ++
Sbjct: 646 QTMKQRTTFYEALTRLLTTDYSDDEEMLQRF---LRPLTDTVEGICTVI 691


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 182 RILDFPCRVTVVGFKLHMYRRRRDKKSL*SVTSATDDARKKSLGSFK 42
           RI   P ++   G    +  R  + ++L S+   T+D  + S+G  K
Sbjct: 39  RIGSSPMKIEFAGLNAPIRMRETENQNLMSIAEQTEDEIRDSMGGTK 85


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 182 RILDFPCRVTVVGFKLHMYRRRRDKKSL*SVTSATDDARKKSLGSFK 42
           RI   P ++   G    +  R  + ++L S+   T+D  + S+G  K
Sbjct: 39  RIGSSPMKIEFAGLNAPIRMRETENQNLMSIAEQTEDEIRDSMGGTK 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,203,089
Number of Sequences: 27780
Number of extensions: 86776
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)