Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_A01
(246 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 27 0.35
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 1.4
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S... 24 2.4
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 24 2.4
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 24 3.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 23 4.3
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 4.3
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 23 5.6
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 23 7.4
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 23 7.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 23 7.4
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 22 9.8
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces... 22 9.8
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 22 9.8
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 22 9.8
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 22 9.8
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 0.35
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 116 NFAVESHNKNVVEEICNLQSNLGHDSL 36
N+ ++ N NV+ +IC SN HDSL
Sbjct: 97 NWYLKERNINVLSDICFPLSNNAHDSL 123
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/51 (21%), Positives = 23/51 (45%)
Frame = -2
Query: 206 LPTIASWAPSLSELYXXXXXXXXXXXGYKSNFAVESHNKNVVEEICNLQSN 54
+PT A+W+ +L +Y + N+ + H+ + +C L +N
Sbjct: 14 IPTAATWSSNLGLIYGAERLIAVADPFKEINYLMAGHSGR-INCVCELATN 63
>SPAC105.02c |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 170
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 110 AVESHNKNVVEEICNLQSNLGHDSLNNVRQAQRN 9
A S+N +++EE+ + Q G +NN R + N
Sbjct: 15 ACRSNNVDMLEEVVHQQEGDGVSFINNARDSLGN 48
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 112 LPLKAITRMLLRKFVTSNQISVTTHLIMSGRPN 14
L L+ R+ ++K+ T + V THL +PN
Sbjct: 553 LCLEGGLRISVQKYETFEDLKVNTHLFRLDKPN 585
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 23.8 bits (49), Expect = 3.2
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = -2
Query: 122 KSNFAVESHNKNVVEEICNLQSNLGHDSLNNV 27
K A+ SH + +E+ ++G D++ N+
Sbjct: 211 KKRIALHSHKAGIEDELDITSKSIGRDTIPNI 242
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.4 bits (48), Expect = 4.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 95 NKNVVEEICNLQSNLGH 45
+K +EEI N SN GH
Sbjct: 1078 HKQPIEEILNYASNFGH 1094
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 23.4 bits (48), Expect = 4.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +1
Query: 127 PEGAPGSAPLLPYS---SLNEGAQLAIVGRNVT 216
P APGSA P + SLN G + G N+T
Sbjct: 72 PSTAPGSAGSTPKTTPVSLNAGVPPSNTGANIT 104
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 106 LKAITRMLLRKFVTSNQISVTTHLIMSGR 20
L+A+ LL K N+I T+HL G+
Sbjct: 4 LEALQVFLLEKLNEKNEIPNTSHLEFDGK 32
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 22.6 bits (46), Expect = 7.4
Identities = 7/21 (33%), Positives = 16/21 (76%)
Frame = -3
Query: 157 VAAPIPELPPVTRATLPLKAI 95
+++P+ + PP +++PLKA+
Sbjct: 1180 LSSPLSKTPPFFSSSVPLKAL 1200
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 22.6 bits (46), Expect = 7.4
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 191 SWAPSLSELYXXXXXXXXXXXGYKSNFAVESHNKNVVEEICNLQS 57
SW P L +L Y+S+ A+ S N ++ I +L+S
Sbjct: 101 SWLPQLKDLIESHKTICESTLAYESDQAMAS--SNTLKRIKDLKS 143
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 22.6 bits (46), Expect = 7.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 221 SFVTFLPTIASWAPSLS 171
SF+T L T+ SW SLS
Sbjct: 104 SFLTRLKTLESWFQSLS 120
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 238 LQRLFQVLLHFCRRSL 191
L+ L VLL+FCR SL
Sbjct: 197 LESLGYVLLYFCRGSL 212
>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 134 ELRDRRRYCHTVHST 178
ELRD R YC V+ +
Sbjct: 243 ELRDSRHYCFVVNGS 257
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 22.2 bits (45), Expect = 9.8
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +1
Query: 31 LLSES*PRFDWRLQIS 78
L+++S P+F WR ++S
Sbjct: 299 LVADSCPKFQWRPEVS 314
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 22.2 bits (45), Expect = 9.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 85 LLRKFVTSNQISVTTHLIMSG 23
LLRKF QI VTT L+ G
Sbjct: 315 LLRKFSERLQIPVTTSLLGLG 335
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 22.2 bits (45), Expect = 9.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -3
Query: 151 APIPELPPVTRATLPLKAI 95
+P+ ELP + T+PL +
Sbjct: 510 SPVKELPAIRPRTIPLNGV 528
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 890,218
Number of Sequences: 5004
Number of extensions: 12476
Number of successful extensions: 40
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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