Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_A01
(246 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726... 29 0.52
01_06_1528 + 38011391-38011635,38012366-38012566,38012659-380128... 27 2.8
01_06_0487 + 29733380-29733448,29733492-29734373,29734851-297348... 26 4.9
12_01_0929 - 9229172-9229483,9230009-9230359 25 6.4
11_06_0215 - 21332429-21333037,21333605-21333649 25 6.4
04_01_0125 - 1317328-1318049,1318061-1319035,1320994-1321143,132... 25 6.4
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 25 6.4
12_01_0835 + 7794487-7794580,7796188-7796291,7796619-7797112,779... 25 8.5
09_06_0022 - 20291787-20291864,20291989-20292010,20292269-202932... 25 8.5
07_03_0878 - 22251023-22251166,22251279-22251329,22251425-222515... 25 8.5
05_01_0557 - 4879244-4879666 25 8.5
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145... 25 8.5
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 25 8.5
>02_04_0236 -
21170753-21170794,21171089-21172220,21172332-21172601,
21173043-21173305,21173406-21173492,21174149-21174326,
21174784-21174984,21175769-21176025
Length = 809
Score = 29.1 bits (62), Expect = 0.52
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 133 GAPGSA--PLLPYSSLNEGAQLAIVGRNVTKLEKV 231
G GSA PLL ++N +Q+AIVG NV +E +
Sbjct: 49 GRSGSAGEPLLRKRTMNTTSQIAIVGANVCPIESL 83
>01_06_1528 +
38011391-38011635,38012366-38012566,38012659-38012836,
38012946-38013208,38013380-38013649,38013753-38014950
Length = 784
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 130 EGAPG-SAPLLPYSSLNEGAQLAIVGRNVTKLEKV 231
EG G PLL N +Q+AIVG NV +E +
Sbjct: 45 EGGGGLERPLLRRRGTNTTSQMAIVGANVCPIESL 79
>01_06_0487 +
29733380-29733448,29733492-29734373,29734851-29734884,
29735177-29735346,29735446-29735784
Length = 497
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 5 EGCVGPAGHY*VSRDRDLIGGYKFPQQHSCYGFQRQSC-SCNRRELRDRRRYCHTVHSTK 181
+G + P + V D DL+ GY Y F R C S +EL R ++ H +
Sbjct: 86 DGRLSPVAAFEVDADMDLLEGY----DDWFYSFFRTLCRSGGLQELAVRNKHVHECYVVP 141
Query: 182 AP 187
+P
Sbjct: 142 SP 143
>12_01_0929 - 9229172-9229483,9230009-9230359
Length = 220
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 4 RGLRWACRTLLSES*PRFDWRLQISSTT 87
R + +ACR L++S PR R +STT
Sbjct: 114 RKITYACRKTLADSRPRVKGRFARNSTT 141
>11_06_0215 - 21332429-21333037,21333605-21333649
Length = 217
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 83 QHSCYGFQRQSCSCNRRELRDRRRYCHTVHSTK 181
Q +CY R+ S + L D Y H ++ K
Sbjct: 49 QQTCYNIDRKFDSSDHEGLNDMSTYAHPINIAK 81
>04_01_0125 -
1317328-1318049,1318061-1319035,1320994-1321143,
1322242-1322546,1323447-1323565
Length = 756
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 86 VVEEICNLQSNLGHDSLNNVRQ 21
+V++IC + SN HDS + + Q
Sbjct: 676 IVDKICPMNSNCSHDSDDEMHQ 697
>03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 124 TRATLPLKAITRMLLRKFVTS 62
T A+LPL+ ++ MLLRK + +
Sbjct: 996 TGASLPLQEVSSMLLRKLIAA 1016
>12_01_0835 +
7794487-7794580,7796188-7796291,7796619-7797112,
7797219-7797358,7797516-7797817,7798312-7798578
Length = 466
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 172 VNCMAVAAPIPE-LPPVTRATLPLKAITRMLLRKF 71
V +A AP+ LPP A+ PLK++ ++L+ F
Sbjct: 166 VAVLAATAPMYRILPPAAPASSPLKSVLQVLVVAF 200
>09_06_0022 -
20291787-20291864,20291989-20292010,20292269-20293218,
20293339-20293629
Length = 446
Score = 25.0 bits (52), Expect = 8.5
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -3
Query: 154 AAPIPELPPVTRATLPLKAITRMLLRKFVTSNQISVTTHLIMSGRPNA 11
AAPIP PVTRA P + +L +SN S H SG +A
Sbjct: 161 AAPIPMALPVTRAGSPAHSSEEQVL----SSNSGSGEEHRQASGSGSA 204
>07_03_0878 -
22251023-22251166,22251279-22251329,22251425-22251500,
22251847-22252229,22252983-22253042,22253133-22253368,
22253457-22253559,22254692-22254824,22254930-22255039
Length = 431
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 119 SNFAVESHNKNVVEEICNLQSNLGHDSL 36
SN VES + V E++ N S L HD +
Sbjct: 145 SNVLVESISSAVAEKVSNANSLLTHDDV 172
>05_01_0557 - 4879244-4879666
Length = 140
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 199 RSLVGRLR*VNCMAVAAPIPELPPVTR 119
R+ LR + A AAP P LPP+ R
Sbjct: 10 RAAASLLRPSSSSAAAAPTPALPPLLR 36
>02_01_0223 +
1453478-1453750,1455788-1456018,1456066-1456200,
1457918-1457971,1458417-1458482,1458593-1458679,
1459338-1459394,1459470-1459500,1459577-1459634,
1459710-1459761,1459881-1459917,1460008-1460210,
1460556-1460633,1460683-1460853,1461126-1461239
Length = 548
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 10 LRWACRTLLSES*PRFDWRLQISST 84
LRW C++LL++ FD R+ + ++
Sbjct: 166 LRWNCQSLLAKGLQEFDMRVCLGAS 190
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 148 PIPEL-PPVTRATLPLKAITRMLLRKFVTSNQIS 50
P PE PP TR LP KA+ + + FV +S
Sbjct: 720 PQPEKKPPRTRPPLPGKAVAALCVASFVVGLLLS 753
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,123,705
Number of Sequences: 37544
Number of extensions: 91777
Number of successful extensions: 280
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -