Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_A01
         (246 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            20   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   6.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   9.1  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 211 HFCRRSLVGRLR*VNCMAVAAPIPEL 134
           HF    ++GR     CMA   P PE+
Sbjct: 29  HFELDYMLGRKITFFCMATGFPRPEI 54


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 166  CMAVAAPIPEL 134
            C+AV  P PE+
Sbjct: 1298 CLAVGVPAPEV 1308


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 217 LLHFCRR 197
           LLHFCR+
Sbjct: 459 LLHFCRQ 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,504
Number of Sequences: 438
Number of extensions: 859
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)