Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P24
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    27   1.5  
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    25   6.0  

>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 115 YL*IGYFAFNCDILSLSKFIVLYF 186
           YL  GYFA NCD + L   ++  F
Sbjct: 328 YLSEGYFALNCDEIDLEAALIFQF 351


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 130 YFAFNCDILSLSKFIVLYFNISIVNLLGGVTLITY 234
           Y A +C+++ ++  + +   +SIVN  G V   TY
Sbjct: 93  YIAMDCEMVGVADDMSVLARVSIVNYHGHVVYDTY 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,084
Number of Sequences: 5004
Number of extensions: 25856
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)