Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P24
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-11|CAC35844.1|  380|Caenorhabditis elegans Hypothetical...    64   7e-11
AF049709-1|AAC36062.1|  380|Caenorhabditis elegans tyrosylprotei...    64   7e-11
U00051-6|AAK70644.1|  259|Caenorhabditis elegans Hypothetical pr...    34   0.082
U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    27   7.2  
AC087081-4|AAK66037.2|  301|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AL132904-11|CAC35844.1|  380|Caenorhabditis elegans Hypothetical
           protein Y111B2A.15 protein.
          Length = 380

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 28/32 (87%), Positives = 29/32 (90%)
 Frame = +2

Query: 476 RELPLIFIGGVPRSGTTLMRAMLDAHPDVRCG 571
           R  P IFIGGVPRSGTTLMRAMLDAHP+VRCG
Sbjct: 67  RTSPFIFIGGVPRSGTTLMRAMLDAHPEVRCG 98


>AF049709-1|AAC36062.1|  380|Caenorhabditis elegans tyrosylprotein
           sulfotransferase-A protein.
          Length = 380

 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 28/32 (87%), Positives = 29/32 (90%)
 Frame = +2

Query: 476 RELPLIFIGGVPRSGTTLMRAMLDAHPDVRCG 571
           R  P IFIGGVPRSGTTLMRAMLDAHP+VRCG
Sbjct: 67  RTSPFIFIGGVPRSGTTLMRAMLDAHPEVRCG 98


>U00051-6|AAK70644.1|  259|Caenorhabditis elegans Hypothetical
           protein F42G9.8 protein.
          Length = 259

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +2

Query: 530 MRAMLDAHPDVRCG 571
           MRA+LDAHPDVRCG
Sbjct: 1   MRAILDAHPDVRCG 14


>U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical
           protein F55C12.5a protein.
          Length = 876

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 346 AAQHRPRYINMVNTLHTRVFFQ-CQHDCLLKYLKFKSTYTLSKLHL 212
           A Q     ++ +N L TR+FF  C+ D  ++ +K K    L+ +HL
Sbjct: 584 AQQISTELVDSINVLATRIFFDFCRDDFWIRQVKQKIQSKLATIHL 629


>U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical
           protein F55C12.5b protein.
          Length = 925

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 346 AAQHRPRYINMVNTLHTRVFFQ-CQHDCLLKYLKFKSTYTLSKLHL 212
           A Q     ++ +N L TR+FF  C+ D  ++ +K K    L+ +HL
Sbjct: 633 AQQISTELVDSINVLATRIFFDFCRDDFWIRQVKQKIQSKLATIHL 678


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 259 KYLKFKSTYTLSKLHLQVSSQW 194
           K  KF+ T TL +LHL    QW
Sbjct: 14  KAAKFRFTVTLQELHLYTDEQW 35


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 259 KYLKFKSTYTLSKLHLQVSSQW 194
           K  KF+ T TL +LHL    QW
Sbjct: 14  KAAKFRFTVTLQELHLYTDEQW 35


>AC087081-4|AAK66037.2|  301|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.14 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 295 RVFFQ-CQHDCLLKYLKFKSTYTLSKLHLQVS 203
           RV ++ C  DCL+KYL+++      + HL+++
Sbjct: 70  RVSYENCNGDCLVKYLEYRERRIDGENHLKIA 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,833,113
Number of Sequences: 27780
Number of extensions: 147389
Number of successful extensions: 407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)