Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P24
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.70 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.70 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 337 HRPRYINMVNTLHTRV 290
           H  +Y+ M++ LHTR+
Sbjct: 318 HMQKYVQMIHDLHTRI 333


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 337 HRPRYINMVNTLHTRV 290
           H  +Y+ M++ LHTR+
Sbjct: 318 HMQKYVQMIHDLHTRI 333


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 534 RISVVPDRGTPPMKISGSSRPGTG 463
           R+S +P        +SGSS PGTG
Sbjct: 376 RMSPLPSIRNRSGLVSGSSTPGTG 399


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 227 IKVTPPSKFTMDILKYNTINLDNDKMSQLN 138
           +++TP   +  DIL YN+ +   D   Q N
Sbjct: 129 LRITPNKLWKPDILMYNSADEGFDGTYQTN 158


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 227 IKVTPPSKFTMDILKYNTINLDNDKMSQLN 138
           +++TP   +  DIL YN+ +   D   Q N
Sbjct: 129 LRITPNKLWKPDILMYNSADEGFDGTYQTN 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,619
Number of Sequences: 438
Number of extensions: 2113
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)