Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_P23
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073 30 1.4
01_03_0214 + 13863123-13863593,13863671-13864132,13864308-138650... 30 1.4
04_04_0994 + 29980076-29980441,29980900-29980998,29981075-299816... 29 1.9
12_02_0881 - 23970143-23970433,23970814-23971116,23971490-239720... 29 3.3
08_01_0789 + 7640021-7640382,7643435-7643480,7644514-7644638,764... 28 5.8
04_04_1286 + 32387687-32387908,32388046-32389494 28 5.8
03_06_0669 + 35420704-35420711,35420792-35420870,35421128-354211... 28 5.8
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215... 28 5.8
>08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073
Length = 900
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 158 IHCRRCE*NNQRGY*KFNWRHRLPTQ*SKSMDLGCCRILFGT-VDEITETLQIYSDMHNN 334
+H R + N G+ K + LP+ + + + CCR G V+E L+ +D H N
Sbjct: 825 VHVRFLKDANMLGFDKLGLEN-LPSSLKRIIVVICCRDASGAEVEEAQAALEHATDSHAN 883
Query: 335 AKKWCWASYGV 367
+ K YGV
Sbjct: 884 SPKLTIMRYGV 894
>01_03_0214 +
13863123-13863593,13863671-13864132,13864308-13865038,
13865121-13865291,13865371-13865629,13866069-13866158
Length = 727
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -3
Query: 436 QYMVLFS-QRTVQEPSVLLSQKHEDAV*SPAPFFCIIVHVTIYL*GFCNFVNCPKQDSTT 260
QYM L + +R ++E S++ H+ PF + ++TI F +F+ PK D T
Sbjct: 497 QYMELSNAKRKMRESSIVGHHDHQ-------PFLSSLAYITIGFDDFFDFLRIPKLD--T 547
Query: 259 AEVH*FTLLCW 227
+ ++L CW
Sbjct: 548 RLLKSYSLFCW 558
>04_04_0994 +
29980076-29980441,29980900-29980998,29981075-29981612,
29982211-29982494,29983014-29983034,29983238-29983452,
29983538-29983691,29984089-29984220
Length = 602
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 348 HHFFALLCMSLYICKVSVISSTV 280
HHFF L CM Y CK+ V TV
Sbjct: 344 HHFFCLKCMQTY-CKMHVKEGTV 365
>12_02_0881 -
23970143-23970433,23970814-23971116,23971490-23972077,
23972606-23972761,23972852-23972910,23974294-23974561
Length = 554
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 443 DNAVHGFIFPTNSARAVSVIVPKT*RRRMKPSTIFLH 333
DN+ F+ +++ A SV+V T R +KP I H
Sbjct: 223 DNSYLHFVLASDNILAASVVVSSTIRSSLKPGRIVFH 259
>08_01_0789 +
7640021-7640382,7643435-7643480,7644514-7644638,
7645028-7645092,7647642-7648186
Length = 380
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -2
Query: 293 FRQLSQTRFDNSRGPLIYFIVLVSGASN*IFNSLFDYFTHIVYNELIFFCQIVTFFHL 120
FRQ+ T SR P I F+ L G F L++ F V++E FC ++ +++
Sbjct: 306 FRQILSTPPFPSRNPKIAFMFLTPGKLP--FEKLWELFFK-VHHEFPLFCALMRMYYI 360
>04_04_1286 + 32387687-32387908,32388046-32389494
Length = 556
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 446 RDNAVHGFIFPTNSARAVSVIVPKT*RRRMKPSTIFLH 333
RDN+++ + +++ AVSV+V T M+P I H
Sbjct: 247 RDNSLYHYCVFSDNILAVSVVVNSTTLNSMRPEKIVFH 284
>03_06_0669 +
35420704-35420711,35420792-35420870,35421128-35421196,
35421713-35421851,35421937-35421995,35422306-35422388,
35422901-35423009,35423088-35423153,35423615-35423672,
35423773-35423877,35423962-35423996,35424085-35424130,
35424282-35424366,35424457-35424562,35425022-35425099
Length = 374
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 105 CV*VMEVKECN--DLAEENQFIVDDVSKIIKEAIENSIGGTAYQHN 236
C+ + EVKECN D+ E Q + + I+ + + G AY HN
Sbjct: 45 CISLREVKECNLYDVIRERQAAFSE--EEIRNFMVQILQGLAYMHN 88
>01_06_0230 +
27718840-27720188,27720983-27721174,27721488-27721569,
27721651-27721839,27721964-27722077,27722470-27722560,
27722632-27722789,27723401-27723826,27724355-27724727,
27725075-27725238
Length = 1045
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 479 RQYMLYAKAEDRDNAVHGFIFPTNSARAVSV 387
R +L A A D +A HGF+ PT R VSV
Sbjct: 19 RGVLLPASAPD-SSACHGFVVPTRRRRRVSV 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,211,600
Number of Sequences: 37544
Number of extensions: 293229
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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