Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P23
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical pr...    82   3e-16
Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical pr...    63   2e-10
U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z35719-3|CAA84797.1|  347|Caenorhabditis elegans Hypothetical pr...    31   0.56 
AL117195-1|CAB60764.2|  368|Caenorhabditis elegans Hypothetical ...    30   0.98 
U41550-7|AAA83288.1|  103|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z22179-10|CAD91636.1|  136|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z71259-5|CAA95796.1|  106|Caenorhabditis elegans Hypothetical
           protein F13G3.4 protein.
          Length = 106

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
 Frame = +3

Query: 168 DDVSKIIKEAIENSIGG-TAYQHNKVNQWTSAVVESCLGQLTKLQKPYKYIVTCTIMQ-K 341
           +DV  IIK+ ++  +G  T Y H    QW    VE    +L    KPYKY+VT + +Q  
Sbjct: 6   EDVHMIIKQVLDEVVGASTQYTHKDSVQWNQKAVEQITKKLVAAGKPYKYVVTSSFLQIS 65

Query: 342 NGAGLHTASSCFWDNNTDGSCTVRWENKTMYCIVSVFGLGI 464
           +G+GL+ ++  +W+  TD S   RWE KTM  IV VF + I
Sbjct: 66  SGSGLNVSTISYWNKVTDSSYMYRWEAKTMLAIVYVFAIAI 106


>Z66500-5|CAA91306.1|  168|Caenorhabditis elegans Hypothetical
           protein T05C12.5 protein.
          Length = 168

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = +3

Query: 171 DVSKIIKEAIENSIGGTAYQHNKVNQWTSAVVESCLGQLTKLQKPYKYIVTCTIMQK-NG 347
           ++  II+++ ++ IG T Y   K++ W S ++++    L KL    K++V CTI  K + 
Sbjct: 66  EIDLIIQKSFDSIIGKTPYSPFKMSDWMSKMIQTISDNLVKLNGSKKFLVHCTISAKTDN 125

Query: 348 AGLHTASSCFWDNNTDGSCTVRWENKTMYCIVSVF 452
             + TA+ C WD   D +    W +KT++  V VF
Sbjct: 126 LAICTANMCSWDTTKDTAYYSEWMSKTIFGAVQVF 160


>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
 Frame = +3

Query: 174 VSKIIKEAIENSIGG-TAYQHNKVNQWTSAVVESCLGQLTKLQKP-YKYIVTCTIMQKNG 347
           V+ +I+E +   +G  T Y  ++    +  +  S   +L  LQ P YKY++   I ++ G
Sbjct: 24  VAGMIQEILGEKLGALTIYNVDEAELVSKDISASIRERLKGLQLPRYKYVIQTMIAEQCG 83

Query: 348 AGLHTASSCFWDNNTDGSCTVRWENKTMYCIVSVFGL 458
            G  TA  C WD + DG  T R+   +++C V VF +
Sbjct: 84  NGATTAVQCVWDEDCDGYLTQRYVTGSIWCEVLVFAI 120


>Z35719-3|CAA84797.1|  347|Caenorhabditis elegans Hypothetical
           protein F17C8.5 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 381 PKNMKTPYEAQHHFFALLCMSLYICKVSVISST 283
           P+N +TP  +  H + +   SL +C +S++SS+
Sbjct: 187 PENAETPSNSLQHDYLIFLSSLLLCSISLLSSS 219


>AL117195-1|CAB60764.2|  368|Caenorhabditis elegans Hypothetical
           protein Y57A10A.2 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 511 INVFDFMIKFRDNICYMPRPKTETMQYMVLFSQRTVQEPSVLLSQKHE 368
           IN  DF+ KFR  +CY+  P+ + ++  +  S  T  +  +  +  H+
Sbjct: 239 INFHDFLKKFRKFLCYLEIPELDGLKSRINISIETTSDEILEFADLHK 286


>U41550-7|AAA83288.1|  103|Caenorhabditis elegans Hypothetical
           protein R04A9.1 protein.
          Length = 103

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -2

Query: 182 FTHIVYNELIFFCQIVTFFHLHDLNATISIPS 87
           F+H++Y E++F   ++    + + NA +++PS
Sbjct: 23  FSHLIYAEMLFRILLIVTIIVTNSNAWVTVPS 54


>Z82086-3|CAB04997.1|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.6 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 360 YEAQHHFFALLCMSLYICKVSVISSTVPNKIRQQPRSIDLLYCVG 226
           Y   HH    + + L+I    VI +  P+K+     S+ LL+ VG
Sbjct: 14  YSGVHHVLTAIEVPLHIFGAYVIVTRTPSKMSSVKASLLLLHLVG 58


>Z22179-10|CAD91636.1|  136|Caenorhabditis elegans Hypothetical
           protein F58A4.7d protein.
          Length = 136

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 135 NDLAEENQFIVDDVSKIIKEAIENSIGGTAYQHNKVNQWTS 257
           +D AEE+Q I+DD   + +E  E    GT      +  W S
Sbjct: 4   SDSAEEDQIIIDDGFDLTEEDEEMMSSGTGALPVTIADWNS 44


>Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical
           protein F58A4.7c protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 135 NDLAEENQFIVDDVSKIIKEAIENSIGGTAYQHNKVNQWTS 257
           +D AEE+Q I+DD   + +E  E    GT      +  W S
Sbjct: 4   SDSAEEDQIIIDDGFDLTEEDEEMMSSGTGALPVTIADWNS 44


>Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical
           protein F58A4.7b protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 135 NDLAEENQFIVDDVSKIIKEAIENSIGGTAYQHNKVNQWTS 257
           +D AEE+Q I+DD   + +E  E    GT      +  W S
Sbjct: 4   SDSAEEDQIIIDDGFDLTEEDEEMMSSGTGALPVTIADWNS 44


>Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical
           protein F58A4.7a protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 135 NDLAEENQFIVDDVSKIIKEAIENSIGGTAYQHNKVNQWTS 257
           +D AEE+Q I+DD   + +E  E    GT      +  W S
Sbjct: 4   SDSAEEDQIIIDDGFDLTEEDEEMMSSGTGALPVTIADWNS 44


>AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.7 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 340 KMVLGFIRRLH-VFGTITLTALALFVGKIKPCTALSLSSALAYNIYCL 480
           ++V G I   H +F T+TLT +   +G +K C A S+S    Y++  L
Sbjct: 279 EIVFGNIPLTHPLFKTLTLTTVKRPIGPLKDC-AFSMSCESDYSLMVL 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,869,382
Number of Sequences: 27780
Number of extensions: 284099
Number of successful extensions: 815
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)