Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P23
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   6.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   8.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   8.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   8.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 474 IYVICQGRRQRQCSTWFYFPNEQ 406
           + V    R + +CS   YFPNE+
Sbjct: 106 VCVAISSRMEYECSRIDYFPNEE 128


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 56  VSICI*LFRDNLGLKSLRLSHGGER 130
           VSIC+  F   L + +L L H G R
Sbjct: 281 VSICLVTFASALAVVTLNLHHRGVR 305


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 384 NNTDGSCTVRWENKTMYCIVSVFGL 458
           NN    CT+ +      CI  VF L
Sbjct: 185 NNYTTDCTIEYSTGNFTCIQIVFNL 209


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 168 DDVSKIIKEAIENSIGGTAYQHNKVNQWTSAVVESCLGQLTKL 296
           DD+  + K        G+   HN++ +   A + +CL +L  L
Sbjct: 32  DDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKVL 74


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 414 NEQCKSRQCYCPKNMKTPYEAQHH 343
           NE   + +C  P N +TP++   H
Sbjct: 408 NELILNTRCENPDNDRTPFKISIH 431


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 414 NEQCKSRQCYCPKNMKTPYEAQHH 343
           NE   + +C  P N +TP++   H
Sbjct: 408 NELILNTRCENPDNDRTPFKISIH 431


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 414 NEQCKSRQCYCPKNMKTPYEAQHH 343
           NE   + +C  P N +TP++   H
Sbjct: 408 NELILNTRCENPDNDRTPFKISIH 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,055
Number of Sequences: 438
Number of extensions: 3725
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)