Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P21
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    27   1.1  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   1.5  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    26   2.0  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   2.6  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    24   6.0  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.0  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    24   7.9  
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy...    24   7.9  

>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 237 ILFPLICFGFREFIKFLKTIRHTLLYSPLDISYVKYIV 124
           I+F L       F+K L ++RHT + S + + Y+ +IV
Sbjct: 143 IVFALFVLTPLSFLKRLDSLRHTSVISLIALCYLVFIV 180


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -2

Query: 239 PYYFPLFVSVLGNL*NS*RLYATHFCIHH*TSRMLNILFFSR 114
           P Y PLF S + NL  S  LY  HF +    S++   LFF R
Sbjct: 85  PAYHPLFFSQMYNLLRSTCLYCHHFKL----SKVKVHLFFCR 122


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 201 FIKFLKTIRHTLLYSPLDISYVKYIVF 121
           FIK + +    L+ SPLDI+  K I+F
Sbjct: 222 FIKSITSAISALILSPLDIARTKIILF 248


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 322 IVPSSCLSFTRPRVSRYFIIN 260
           I+PSS +SF R  +S+ +++N
Sbjct: 118 IIPSSDVSFIRDLISKNYVVN 138


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 143 EMSSGEYRSVWRIVFRNFINSLKPKQI 223
           E++SG+   +  ++F+ F N + P++I
Sbjct: 866 EITSGDELLLVELIFQGFFNQMPPEEI 892


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 313 SSCLSFTRPRVSRYFIINIAYVVFSHIISPYLFRF*GIY 197
           SS +  + P     +I  I +  +S + SPYLF++  ++
Sbjct: 66  SSSIGLSNPNKFSIYIY-IYFFFYSFLCSPYLFKYISLF 103


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 240 PILFPLICFGFREFIKFLKTIRHTLLYSPLDI 145
           P   P+ C      IK L+  RH  + S LDI
Sbjct: 72  PFNHPVFCLRTLREIKLLRHFRHENIISILDI 103


>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 221 IRGNNMGKDYIGNVYYEIPADPRSGKRKATRWYDPAKGKDL 343
           +R + +G+D+  N++  +   P  GK+  T ++  +KG  L
Sbjct: 166 VRYDGIGEDFDPNIHEAVFQIPVEGKKPNTVFHCESKGFQL 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,301,069
Number of Sequences: 5004
Number of extensions: 22848
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)