Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P21
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p...    31   0.31 
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    28   1.6  
AC024090-8|AAF35422.2|  649|Caenorhabditis elegans Hypothetical ...    28   1.6  
Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    26   6.6  

>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
           protein C53B4.4e protein.
          Length = 1544

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 231 FPLICFGFREFIKFLKTIRHTLLYSPLDISYVKYIVF 121
           FP       EF+K+ +T +H  + SP+++  ++ IVF
Sbjct: 289 FPYEQLNLSEFLKYAQTSKHFFILSPVNVYCIQKIVF 325


>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
           protein C53B4.4b protein.
          Length = 1586

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 231 FPLICFGFREFIKFLKTIRHTLLYSPLDISYVKYIVF 121
           FP       EF+K+ +T +H  + SP+++  ++ IVF
Sbjct: 289 FPYEQLNLSEFLKYAQTSKHFFILSPVNVYCIQKIVF 325


>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
           protein C53B4.4a protein.
          Length = 1584

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 231 FPLICFGFREFIKFLKTIRHTLLYSPLDISYVKYIVF 121
           FP       EF+K+ +T +H  + SP+++  ++ IVF
Sbjct: 289 FPYEQLNLSEFLKYAQTSKHFFILSPVNVYCIQKIVF 325


>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 340 ILTFCRIVPSSCLSFTRPRVSRYFIINIAY 251
           +L +C+I    C SFT   +  YF++ + Y
Sbjct: 43  LLIYCKIAADICYSFTVSIMKSYFLVILCY 72


>AC024090-8|AAF35422.2|  649|Caenorhabditis elegans Hypothetical
           protein C52E2.8 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +2

Query: 143 EMSSGEYRSVWRIVFRNFINSLKP 214
           +++SG Y+  W+I+  NF+++ +P
Sbjct: 297 QITSGNYKVAWKILDHNFLSNARP 320


>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 219 CFGFREFIKFLKTIRHTL 166
           C GFRE ++FLK I + L
Sbjct: 201 CAGFRELLRFLKEISYKL 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,028,979
Number of Sequences: 27780
Number of extensions: 121770
Number of successful extensions: 307
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)