Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P20
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    29   0.64 
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   0.84 
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    26   4.5  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   4.5  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   6.0  
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    25   7.9  

>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = -1

Query: 473 IFWIPPILSNFFFRFTLMYIF 411
           + WI P++S+ FF ++L+++F
Sbjct: 437 VHWIVPLISSIFFGWSLLFVF 457


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 473 IFWIPPILSNFFFRFTLMYIF 411
           I WI PI+++ FF F+L+ +F
Sbjct: 442 IHWIVPIIASAFFGFSLLIVF 462


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 200 NFTYMVNRGHRPQQYGHAILILSLNFIMHALQFYFTIVFH 81
           N T  V   H  Q  GH I I+  N+  +AL F   ++FH
Sbjct: 72  NKTITVCTNHY-QVIGHPISIIGSNYERNALIFNMCMIFH 110


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -1

Query: 503 LSTQYFS*TGIFWIPPILSNFFFRFTLMYIFHF---NLRLYTFFPLI 372
           L T YF     +W   + ++F + F  +Y F F   N  L +F+ ++
Sbjct: 166 LVTSYFQHVNWWWPTFVYNDFMYEFERLYAFGFHSNNAWLISFYSIL 212


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 409 WKMYIRVNRKKKLERIGGIQKIPVYE 486
           WK Y+  N K+ L++ G +QK P ++
Sbjct: 369 WKDYLDNNSKEILDQFGFLQKRPSHD 394


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 373 ISGKNVYKRKLKWKMYIRVNRKKKL 447
           I  K    R +KW  YIR+ R++K+
Sbjct: 40  IQPKRDLSRFVKWPEYIRLQRRRKI 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,948
Number of Sequences: 5004
Number of extensions: 47668
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)