Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P20
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U37429-7|AAA79351.2|  218|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine re...    27   7.2  

>Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical
           protein F09B12.2 protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 467 WIPPILSNFFFRFTLMYIFHFNLRLYTFFPL 375
           WI   +S + F   L+++F F + L+TF+ L
Sbjct: 193 WIAGYISIYQFLHVLLFVFTFTVSLFTFYLL 223


>U37429-7|AAA79351.2|  218|Caenorhabditis elegans Hypothetical
           protein F09E5.11 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 555 FTHHHLKTTERIGIGLIPFNAVFFVDRYFL 466
           + H +L    R   GL+P   VFF D YF+
Sbjct: 156 YPHLNLDLPTRFIFGLVPATIVFFCDLYFV 185


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
            protein Y46G5A.6 protein.
          Length = 1002

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 446  NFFFRFTLMYIFHFNLRLYTFF 381
            NFFF F  M+ F F+L+++  F
Sbjct: 937  NFFFHFENMHFFKFSLQIWRHF 958


>AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 16 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 458 PILSNFFFRFTLMYIFHFNLRLYTFF 381
           P+L + F R     +FHFN+RL + F
Sbjct: 33  PVLFHMFHRCKNTQLFHFNIRLISAF 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,758,273
Number of Sequences: 27780
Number of extensions: 261766
Number of successful extensions: 673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)