Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P18
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.3  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    26   3.9  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   3.9  
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.2  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   6.9  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   9.1  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    25   9.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.1  

>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +1

Query: 220 ELVQLMKWKQARGRFYPQLSYLIKVNTPRAV----MQETKKAFRKLPNIESAMTALSNLK 387
           E++++++     G+ Y Q+   ++V T + V    ++E K+AF    + E+   +L NL+
Sbjct: 74  EVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLR 133

Query: 388 GV 393
            V
Sbjct: 134 RV 135


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 217 EELVQLMKWKQARGRFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTAL 375
           E+L  L    QA  R Y    +  + +      ++  K F+K  N+E+ ++AL
Sbjct: 17  EQLSNLTSDSQANKRVYEDYDFKDETSAKPIPTEKKLKVFKKDDNVETLLSAL 69


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 200 FFAPRFNLLWQFILVPIIQFY-EFLGFLCFQFSFQFN 93
           FF P+ N  W FI +  + F+ EF     F F+F F+
Sbjct: 53  FFYPKRNW-WFFIKMRYLSFFFEFFFLFSFAFAFDFD 88


>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 15  AKDTSTFFLEANAKEFDSVLKLYPQAIKLKAELKTKKPEELIKL 146
           A+  S F L  + ++ + + K YP A++    L ++ PE+L KL
Sbjct: 36  ARKPSDFELNNSIEDAEKI-KTYPAALRYIFALNSRHPEKLQKL 78


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = +1

Query: 169 CQRRLNRGAKNAHMIHEELVQLMKWKQARGRFYPQLSYLIKVNTPRAVMQE 321
           C++RL+R   N H ++ E  +++   ++R  ++   + L K      + Q+
Sbjct: 100 CEKRLSRARMNLHKLNAEKRKILDALKSRKEYFETQALLEKYGEQPTLAQK 150


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +3

Query: 33  FFLEANAKEFDSVLKLYPQAIKLKAELKTKKPEELIKLDNWYQNELPKKIKSRGKECTHD 212
           FF + + K F  +LK+  +A    AEL+ +K   +++L    +N  P   KS  ++ T  
Sbjct: 350 FFKQEDVKYFGKLLKVEDEAKLTIAELRERK---ILRLLLKVKNGTPPMRKSALRQLTDQ 406

Query: 213 TR 218
            R
Sbjct: 407 AR 408


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +3

Query: 48  NAKEFD---SVLKLYPQAIKLKAELKTKKPEELIKLDNWYQNE-LP-KKIK 185
           + ++FD    +++  P A  +KAE KTK+P      +    NE +P KK+K
Sbjct: 88  SVEQFDFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVK 138


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 584  LPQPFCSLFNLSQTLLIWVTKLR---YSLAV*SLPSISGIACKHSSAM 450
            LP+   S FN S+T +  VT L+   Y   V ++PS+   A K S+ +
Sbjct: 1559 LPELAASFFNSSKTYMHLVTLLKERSYLYKVSNIPSLLESAAKLSTTL 1606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,405
Number of Sequences: 5004
Number of extensions: 54199
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)