Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P18
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0995 - 29545058-29545204,29545988-29546074,29546166-295463...    81   9e-16
10_08_0953 - 21775496-21775756,21776022-21776120,21776225-217763...    29   2.3  
03_06_0035 - 31201115-31203646                                         28   5.4  
04_01_0029 + 372486-373426,373533-373938,374380-374832                 27   9.4  
02_02_0082 + 6615408-6615606,6615736-6615866,6615957-6616072,661...    27   9.4  

>03_05_0995 -
           29545058-29545204,29545988-29546074,29546166-29546361,
           29546686-29546915
          Length = 219

 Score = 80.6 bits (190), Expect = 9e-16
 Identities = 49/148 (33%), Positives = 76/148 (51%)
 Frame = +1

Query: 181 LNRGAKNAHMIHEELVQLMKWKQARGRFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIES 360
           L R      +   ELV+L++WK +RG++ P+L   +K      V   + KAF  LP++  
Sbjct: 49  LRRRDPEPFLAKPELVRLLQWKLSRGKWRPRLMDFVKGLEDAVVESASCKAFAALPDLRK 108

Query: 361 AMTALSNLKGVGXXXXXXXXXXXNPDFAPFMADECLQAIPEMEGSDYTAKEYLNFVTHIR 540
           A+T L+ LKGVG            PD APFM+DE + A       +YT K+YL F   ++
Sbjct: 109 AITELTVLKGVGPATASAVLAAYAPDVAPFMSDEAMVAALG-NAKEYTLKQYLAFAEKLQ 167

Query: 541 SVCDRLNKEQNGCGKKWSPHMVELALWT 624
           +     +KE +   + ++   VE ALW+
Sbjct: 168 T----KSKELSSGEEVFTTSDVERALWS 191


>10_08_0953 -
           21775496-21775756,21776022-21776120,21776225-21776329,
           21776854-21776946,21777039-21777092,21777549-21777623,
           21777826-21777948
          Length = 269

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 138 IKLDNWYQNELPKKIKSRGKECTHDTRRASPAHEME 245
           IK   W+   LPK+I  R K    DT  A P   +E
Sbjct: 190 IKKHTWFLKNLPKEISEREKADYKDTDAAPPTQAVE 225


>03_06_0035 - 31201115-31203646
          Length = 843

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 259 RFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALSNLK 387
           RF P+ +YL+    P AV  +  + FR  P+  S ++   ++K
Sbjct: 37  RFVPRDNYLLSCGAPAAVQLDDGRTFRSDPDSASFLSTPVDIK 79


>04_01_0029 + 372486-373426,373533-373938,374380-374832
          Length = 599

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 42  EANAKEFDSVLKLYPQAIKLKAELKTKKPEEL--IKLDNWYQNELPKKIKSRGKECTHDT 215
           E N+ E D++ +L    IKL+A +KT    ++    L  W      KK+K   +EC  DT
Sbjct: 26  EDNSNEGDNIERLEMAQIKLEAAIKTSNKWQITDTPLLRW-----QKKLKRASEEC-DDT 79

Query: 216 RRASPAHEME 245
            R      +E
Sbjct: 80  LRKCKQRALE 89


>02_02_0082 +
           6615408-6615606,6615736-6615866,6615957-6616072,
           6617109-6617230,6617353-6617645,6617774-6617875,
           6620437-6620865,6621026-6621775,6621915-6622109
          Length = 778

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +3

Query: 87  QAIKLKAELKTKKPEELIKLDNWYQN--ELPKKIKSRGKECTHDTRRASPAHEMETS*RK 260
           Q+I   A+L+ +  + L+  D   ++     KKI+    EC+ + R+   A + E    +
Sbjct: 289 QSIDEVAKLRKELQDTLVMYDKACEDLVHAKKKIQVLSSECSEEARKVEHALQEE----E 344

Query: 261 VLSTIVISYKSEHAESCD 314
            L  +V   K++H E+ +
Sbjct: 345 ALKQVVADEKAKHLEAIE 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,289,944
Number of Sequences: 37544
Number of extensions: 347081
Number of successful extensions: 737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)