Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P16
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   1.3  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   2.9  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   2.9  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    26   3.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   3.8  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    25   5.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.1  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   5.1  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    25   8.9  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   8.9  

>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 501 AESGQTQVPEYSSKWRPAVHFTSVASPSMQ 412
           A+  +  VP++   WR  +H  S+A+ S Q
Sbjct: 619 ADDEEEDVPDHQPSWRGRIHSFSIATDSSQ 648


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 19/80 (23%), Positives = 29/80 (36%)
 Frame = +3

Query: 261 PSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVMPPK* 440
           P G     +    L++ + L  +  S T  +H+ T                   V P   
Sbjct: 208 PYGSPVRSSKNPFLSSNSRLPTDDSSHTVGSHSFTSGTHPPIVSSNSAFTLPNAVTPAA- 266

Query: 441 SAPLVSTSTNIPAPVSGPTQ 500
            APL+ + +  PA VS P Q
Sbjct: 267 QAPLIRSVSEYPANVSPPAQ 286


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -3

Query: 466 VEVETSGALHFGGITFDAVEEDVADRRVGVSEETVTAWALAVWLGGLQLSPVSAVNVEG 290
           +++ T+ AL    +T + +  +V +   G  +E V  + L VW GG +  P++   +EG
Sbjct: 324 IKIRTNTALK--KVTAENIHVEVKNPD-GSKQEEVIPYGLLVWAGGNRARPLTKKLMEG 379


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 332 PKPNSQCPRRNGFFAHPDTSVCNIF-FNCIEGDATEVK 442
           PKP    P+   F   PD SV N + FN I  DA   K
Sbjct: 149 PKPQPGNPKPRYFRLKPDLSVINRYGFNSIGHDAILAK 186


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 149 PNKDGQYEDERQCDKFYECVDGVATTKICPDGLVFDPTIRK 271
           P     Y D+   ++  E V G   T +C   ++FD TIR+
Sbjct: 488 PTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRE 528


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 459 WRPAVHFTSVASPSMQLK 406
           WR   H T  ASPS++L+
Sbjct: 240 WRQVTHLTEYASPSVRLE 257


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 20/73 (27%), Positives = 27/73 (36%)
 Frame = +3

Query: 264 SGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVMPPK*S 443
           S  STS+  P T T+ T  + N P  T S    T                    +P    
Sbjct: 142 STSSTSIPIPPTSTSSTDTNSN-PLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVP---- 196

Query: 444 APLVSTSTNIPAP 482
            P  ++ST+IP P
Sbjct: 197 -PTSTSSTSIPIP 208



 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 240 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVT 365
           T   SI P+G ST+  +P+     T  +  PP   +++   T
Sbjct: 286 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 327



 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 240 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVT 365
           T   SI P+G ST+  +P+     T  +  PP   +++   T
Sbjct: 340 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 381


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 409 EEDVADRR-VGVSEETVTAWALAVWLGGLQLSPVSAVNVEGLVTLVDFP 266
           + ++ DR+ +  S ++  + +LA  L  L ++P +    +GL+ +VD P
Sbjct: 144 KSNLTDRKPIPTSRKSNKSDSLASALSQLDINPSNVNKFDGLINIVDHP 192


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 475 GIFVEVETSGALHFGGITFD 416
           G+F  + TSG  H GG  FD
Sbjct: 245 GVFEVLATSGDTHLGGEDFD 264


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 170 EDERQCDKFYECVDGVATTKICPDGLVFDPTIRKINKCDQP 292
           EDE + D++ E VDG A+  I  D +  D       K   P
Sbjct: 133 EDEWESDEYEEVVDGSASHPIEEDSVSTDFQNHDYEKSSDP 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,038
Number of Sequences: 5004
Number of extensions: 33457
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)