Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_P15
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S... 51 9e-08
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa... 51 9e-08
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 30 0.17
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.1
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 2.8
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 26 2.8
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 3.7
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 26 3.7
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces... 25 4.9
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 6.5
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 8.5
>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
S30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 61
Score = 51.2 bits (117), Expect = 9e-08
Identities = 28/60 (46%), Positives = 31/60 (51%)
Frame = +1
Query: 253 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 432
GKVHGSLARAGKVK QTP + Y RRFVNV G +R N +S
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
S30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 61
Score = 51.2 bits (117), Expect = 9e-08
Identities = 28/60 (46%), Positives = 31/60 (51%)
Frame = +1
Query: 253 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 432
GKVHGSLARAGKVK QTP + Y RRFVNV G +R N +S
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 30.3 bits (65), Expect = 0.17
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 79 EWSESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLV 195
EWSES N +L+ +E E++TL GAP E++ L+
Sbjct: 14 EWSESYIAYSNLKKLIYSLEHEQITLQQ-GAPDEETRLL 51
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 437 FYELELGPRRRPKVWTTFTNLLLYWILRLARPVLFFFFCC 318
FYEL RP + + LL+ +++ ++ +L FFF C
Sbjct: 6 FYELYNIKNIRPLIPSFHVCLLIMFLILYSQEILSFFFMC 45
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 504 FFFFFLKQKRCYICIVVLFTELILRVRVGSTTAAEGLDNV 385
FF+ FL R +C + +FTE+ ST + E LD +
Sbjct: 129 FFYAFLNI-RTLVCGITIFTEIARYSMYHSTLSVEKLDEM 167
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 64 RTSLREWSESIGDIKNRLRLLADVESEE 147
R +L ++ ES +KNR+ L DVE+++
Sbjct: 167 RLALYKFEESTEQVKNRMIALKDVEADQ 194
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 55 GHRRTSLREWSESIGDIKNRLRLLADVESEE 147
G++ SLR + I + KN LRLLA S++
Sbjct: 462 GNQIESLRTQNREIDEEKNHLRLLASKNSDK 492
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 341 VLFFFFCCFSTLGVWPLTLPAR 276
+++ FFCC S +GV + P R
Sbjct: 331 IVYSFFCCLSAVGVLHMLNPFR 352
>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 155
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 436 NQFCK*YNNANIT-SFLLQKKK 498
N FC Y NA ++ SFLLQ KK
Sbjct: 78 NAFCVDYENAPLSESFLLQAKK 99
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 349 HVRSSSFSFAVSLLWASGL*LYQHEPGIRALYH 251
+V ++S LW++ L + QHE G ALY+
Sbjct: 159 NVANNSLKVKPLTLWSTLLYIVQHEGGYPALYN 191
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 297 PD-AQSRETAKEKEEDRTC*AQDPIQQEIRERCPDLRPPSWTQ 422
PD AQ E K+ED +D ++ + + P + P W Q
Sbjct: 17 PDSAQPMELDVSKKEDTEPEVRDEAKEFLLSQLPQVEVPEWAQ 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,647
Number of Sequences: 5004
Number of extensions: 31495
Number of successful extensions: 89
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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