Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P15
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           67   7e-12
05_03_0314 + 12203589-12204675,12207915-12208861                       32   0.23 
08_02_0919 - 22627147-22627326,22627646-22627726,22627827-226281...    28   4.9  
04_04_0562 + 26252253-26253014                                         28   4.9  
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446...    28   4.9  
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511...    27   6.5  
01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53...    27   6.5  
11_06_0311 - 22279202-22279690,22279976-22280103,22281249-222813...    27   8.6  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 32/59 (54%), Positives = 37/59 (62%)
 Frame = +1

Query: 253 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSN 429
           GKVHGSLARAGKV+GQTP                  +QYNRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60


>05_03_0314 + 12203589-12204675,12207915-12208861
          Length = 677

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -1

Query: 139 SQHQQEAGGDS*YHRWILTIHVRTCVDDLNVKLHFVSSYQE 17
           S HQQ+ GGD  +H  IL ++  + V++L+++L    + +E
Sbjct: 636 SNHQQQDGGDDQHHEKILKLYRSSSVEELDLELRLGEAPKE 676


>08_02_0919 -
           22627147-22627326,22627646-22627726,22627827-22628103,
           22629451-22629755,22629835-22629987,22630318-22631076
          Length = 584

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 103 YHRWILTIHVRTCVDDLNVKLHFVSSYQE 17
           +H W+L +H+R  + DL + L +   YQ+
Sbjct: 85  FHDWLLHLHLRGGLRDLELTLRYEFMYQK 113


>04_04_0562 + 26252253-26253014
          Length = 253

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 226 FEXSSXMKALTQDMSPQGAHRT*TESPPHSQHQQEA 119
           F+ +        D+   G HR   E+ PH++HQ++A
Sbjct: 67  FQGTGAPNEALGDVRCPGVHRDAIEAEPHTEHQRDA 102


>02_05_0690 -
           30943184-30943305,30944048-30944459,30944549-30944610,
           30944724-30944787,30944880-30944947,30945039-30945168,
           30945276-30945341,30945794-30946369
          Length = 499

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 395 WTTFTNLLLYWILRLARPVLFFFFCCFST 309
           W +  +L   WIL    PVL  FFC FS+
Sbjct: 66  WGSLVHLGDSWILAFWFPVLTEFFCAFSS 94


>08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,
            5119630-5119746,5119930-5120295,5121365-5121634
          Length = 971

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = +1

Query: 79   EWSESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSXNWXARXXXTVPLLGGK 258
            E +E + D K    L    + ++ T ++C  P ED    S+ +  W  +    +    G 
Sbjct: 890  EPAEPVADAKEEKELAVPADEDQTTCALCQEPFED--FYSDETEEWMYKGAVYMNAPDGN 947

Query: 259  VHG 267
            + G
Sbjct: 948  IGG 950


>01_01_0069 +
           536787-537068,537193-537493,537528-537581,538848-539241,
           539345-539595,539678-539798,539893-540133,540341-540445,
           540571-540615,540738-540890,541132-541410,541705-541841,
           541975-542017,542228-542329
          Length = 835

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 208 MKALTQDMSPQGAHRT*TESPPHSQHQQE 122
           +K +  D SPQG     T S PH  HQQ+
Sbjct: 30  LKRMQHDYSPQGT--IITTSTPHDHHQQQ 56


>11_06_0311 -
           22279202-22279690,22279976-22280103,22281249-22281355,
           22282799-22282888,22283590-22283660
          Length = 294

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 169 HRT*TESPPHSQHQQEAGGDS*Y 101
           H T T SP H+QH Q AG    Y
Sbjct: 205 HPTNTLSPLHNQHHQSAGASQVY 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,550,125
Number of Sequences: 37544
Number of extensions: 223981
Number of successful extensions: 573
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)