Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P15
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    73   1e-13
AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical ...    28   3.3  
U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z81043-4|CAB02798.1|  179|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 39/97 (40%), Positives = 49/97 (50%)
 Frame = +1

Query: 142 EEVTLSMCGAPLEDSCLVSELSXNWXARXXXTVPLLGGKVHGSLARAGKVKGQTPXXXXX 321
           EE ++S     L +   + E      +       LLGGKVHGSLARAGKV+ QTP     
Sbjct: 34  EEFSISYGSKVLSEELTLGECQIESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQ 93

Query: 322 XXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 432
                        +QY RR+VNV    G++RGPNSNS
Sbjct: 94  DKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPNSNS 130


>AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.9 protein.
          Length = 1142

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -3

Query: 371 LYWILRLARPVLFFF----FCCFSTLGVWPLTLPARARDPCTLPPRRGTVXXXRAXQLXE 204
           +++IL    P L++F    F    +  ++ + + ARA D   +P R+G     +A Q+ E
Sbjct: 330 VFYILNCVNPYLYYFKKYIFVNEYSDNIYVVYVSARAVDSSDIPKRKGIASSEQAEQVQE 389


>U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical
           protein C16C8.4 protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 88  ESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSE 201
           +++ DIKN +    D+      LS  G  LED C + +
Sbjct: 173 DTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGD 210


>AF036705-9|AAO91724.1|  686|Caenorhabditis elegans Hypothetical
           protein F37C4.2 protein.
          Length = 686

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 362 ILRLARPVLFFFFCCFSTLGVWPLTLPA 279
           IL+ ++PV +F       + V+P TLPA
Sbjct: 257 ILKFSQPVSYFALVILLAINVFPFTLPA 284


>Z81043-4|CAB02798.1|  179|Caenorhabditis elegans Hypothetical
           protein C29F3.5 protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 341 VLFFFFCCFSTLGVWPLTLPARARDPCTLP 252
           ++F FFC FS  G  P+T P    +P  +P
Sbjct: 6   IIFAFFCMFSVEGCIPMTPP---EEPVVVP 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,609,631
Number of Sequences: 27780
Number of extensions: 185868
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)