Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P14
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    27   1.5  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   4.5  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   4.5  
SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase...    25   7.8  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.8  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = -3

Query: 205 LAEVLLPRLVDHILNYGHSFSPERALRLVTMTVTTHRLKSFLDD*KVFREELHLLLYIIR 26
           +A VL P+L+D+  +   +    R   L++  + +  +++  +D K+    + LLLYI++
Sbjct: 63  IANVLEPKLIDNQYSLIPALPSARTDPLLSQ-LNSLNIQNATEDEKLQETSIRLLLYIVQ 121

Query: 25  TVLSEAL 5
               EA+
Sbjct: 122 RKFPEAV 128


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 193 ELLQGNPLYSH-IRYADGRESTVSNRQLAP 279
           ELL  +P   + I+Y +GRE  +SN  L P
Sbjct: 414 ELLITSPTVPYRIKYKNGREEVISNPNLFP 443


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 52  TPHERLFNHPRMTSNGESLPS 114
           +PH    NHP   S+ ESLPS
Sbjct: 141 SPHGNTSNHPSPISSLESLPS 161


>SPAC29E6.05c ||SPAC30.09c|peptide methionine sulfoxide reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 170 YFELRTFFFTRTCPSVSNHDGND 102
           Y ++  FFF    P+ SN  GND
Sbjct: 70  YDKIIEFFFAMHDPTTSNQQGND 92


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 419 SVFLW*IYVLVLYKTLMVLTVSHYLGLSSCAVG 321
           SVFL    +++L+  +  LT    LGL S A+G
Sbjct: 56  SVFLKFSLIVLLFSLMFSLTFGSLLGLISLALG 88


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 217 YSHIRYADGRESTVSNRQLAPLPSACSDEDMMSDCPTAQEE 339
           Y  + YAD     +S  +L P       +D+  DC T +E+
Sbjct: 44  YEWLTYADKCVIELSKSELKPNEEKELPKDIKEDCKTVEEK 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,192
Number of Sequences: 5004
Number of extensions: 38763
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)