Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_P14
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0459 + 8649448-8651994 30 1.1
07_01_0017 - 114497-114547,114700-114816,114917-114997,115312-11... 29 1.5
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 29 2.6
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381... 28 3.4
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 28 3.4
10_07_0126 - 13143485-13144117,13144204-13145238 28 4.5
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 27 6.0
08_02_0923 - 22649420-22649605,22649694-22649774,22649867-226501... 27 7.9
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402... 27 7.9
03_04_0123 + 17475020-17475243,17475367-17475445,17476295-174763... 27 7.9
02_05_0399 + 28658667-28658922,28659287-28659443,28659527-286597... 27 7.9
>03_02_0459 + 8649448-8651994
Length = 848
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 208 CLAEVLLPRL--VDHILNYGHSFSPERALRLVTMTVTTHRLKSFL 80
C AE+L + D ++Y + +PE+++R + V HRL SFL
Sbjct: 590 CDAELLRKEMNETDVPISYSGAGNPEKSIRKAALEVILHRLLSFL 634
>07_01_0017 -
114497-114547,114700-114816,114917-114997,115312-115371,
116029-116238,116412-116720,116790-117080
Length = 372
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 64 RLFNH-PRMTSNGESLPSWLLTEGHVLVKKNVRNSKYDPLVEEVELLQGNPLYSHIRYAD 240
RL +H R TS SLP +++ G++ N + D L + +PL YA
Sbjct: 42 RLLSHLQRRTSTSTSLPVPVVSVGNLTWGGNGKTPMVDFLARAFHRIGVSPLILTRGYAG 101
Query: 241 GRESTVSNRQLA 276
G ES + R+L+
Sbjct: 102 GDESRMLRRRLS 113
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 151 NVRNSKYDPLVEEVELLQGNPLYSHIRYADGRESTVSNRQLAPLPSACSDEDM 309
N+ S+ +E+ + +G L RY GR T N + SA DED+
Sbjct: 747 NILKSREPKAYKEI-MAKGRELEKQFRYKQGRPQTSRNEDASSQGSALIDEDI 798
>10_01_0345 -
3811057-3811236,3811342-3811615,3811732-3812289,
3812602-3812747,3812930-3813097,3813896-3814003,
3814859-3815029,3816557-3816949,3817522-3817617,
3817715-3817774,3818600-3818744,3819296-3819520,
3820106-3820254
Length = 890
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 16 SIRSLLCTTTNVTPHERLFNHPRMTSNGESLPSWLLTEGHVLVKKNVRNSKYDPLVEEVE 195
++ SLL H + ++ SNG SL +LT+ V +++V S D + E
Sbjct: 589 TVSSLLAPFVRAKVHTLDESATKLNSNGPSLDGIVLTDNGVTCEEDVSTSNVDEEAADEE 648
Query: 196 LL 201
+L
Sbjct: 649 VL 650
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +1
Query: 52 TPHERLFNHPRMTSNGESLPSWLLTEGHVLVKKNVRNSKYDPLVEEVELLQGNPLYSHIR 231
T H + P T +G+ LP W+ + + D V+ +E+L+G P
Sbjct: 366 TKHSNILRVPFKTEDGKVLPQWV---SRFDIYPYLERYAQDSSVKILEILEGKPDLVIGN 422
Query: 232 YADG 243
Y DG
Sbjct: 423 YTDG 426
>10_07_0126 - 13143485-13144117,13144204-13145238
Length = 555
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 352 TTWDFLL-VLLGSQTSCPHQSMLTEVVLIA 266
T W + L LLG+ T C H ++L VL+A
Sbjct: 15 TWWAYALPALLGADTLCAHPALLAGAVLLA 44
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 392 LVLYKTLMVLTVSHYLGLSS 333
+V+Y+T M LTVS+ +GLSS
Sbjct: 1709 VVVYETAMPLTVSYQVGLSS 1728
>08_02_0923 -
22649420-22649605,22649694-22649774,22649867-22650146,
22650412-22650716,22650809-22650961,22651425-22652261
Length = 613
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 76 HPR--MTSNGESLPSWLLTEGHVLVKKNVRNSKYDPLVEEVELLQGNPLYSHIRYADGRE 249
HPR SNGES+ L + + + ++ + P VEE++ + + I++ + E
Sbjct: 462 HPRRRQRSNGESVAQLQLLQEQLQELEKEKDQHHKPTVEELKEIIQEGKKNAIKFQNYFE 521
Query: 250 STVSN 264
ST+ +
Sbjct: 522 STIQS 526
>06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,
4022521-4022673,4022749-4022912,4022990-4023137,
4023530-4023652,4023774-4023861,4023951-4024129
Length = 1273
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +1
Query: 193 ELLQGNPLYSHIRYADGRESTVSNRQLAPLPSACSD--EDMMSDCPTAQ-EESPK**DTV 363
ELL G Y+ + Y V+N P+P +C +M C +++ E P +
Sbjct: 1197 ELLTGEEPYAELHYGAIIGGIVNNTLRPPVPESCDPRWRSLMEQCWSSEPSERPSFTEVG 1256
Query: 364 RTIRVLYRTST 396
+ +R + ST
Sbjct: 1257 KRLRAMATPST 1267
>03_04_0123 +
17475020-17475243,17475367-17475445,17476295-17476393,
17476499-17476682,17477139-17477206,17477530-17477787,
17477996-17478049,17478149-17478355,17478507-17478633,
17479409-17479575
Length = 488
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 148 KNVRNSKYDPLVEEVELLQGNPLYSHIRYADGRESTVSNRQLAPLPSACSDEDMMSDCPT 327
+ ++ + P + + +L QGN L SHI G +N + A S+ MM++ P
Sbjct: 342 RQMQAGRMQPGMSQSQLNQGNQLRSHISQFTG----AANSAMFTAAQASSNSQMMANIPG 397
Query: 328 AQE 336
+ +
Sbjct: 398 SMQ 400
>02_05_0399 +
28658667-28658922,28659287-28659443,28659527-28659746,
28660549-28660602,28660671-28660750,28661269-28661351,
28661385-28661546,28661667-28662071,28662151-28662503,
28662590-28662835,28663158-28663481,28664110-28664154
Length = 794
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 403 YQRKTDTTLLRGLCSRLTYMGRMMC 477
Y+ D T+L G+C R Y+ +MC
Sbjct: 437 YKADIDATVLCGICRRDCYVAHIMC 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,449,295
Number of Sequences: 37544
Number of extensions: 245199
Number of successful extensions: 650
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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