Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P14
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043698-1|AAB97561.2|   97|Caenorhabditis elegans Hypothetical ...    28   4.0  
AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.      27   7.0  
AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstrea...    27   7.0  
AL032647-2|CAA21689.1|  178|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AF043698-1|AAB97561.2|   97|Caenorhabditis elegans Hypothetical
           protein C54G6.3 protein.
          Length = 97

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 360 CVSLLGTFFLCCWAVRHHV 304
           C+SL+    +CCWAV  HV
Sbjct: 26  CISLI-QLLVCCWAVAQHV 43


>AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.
          Length = 481

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +1

Query: 79  PRMTSNGESLPSWLLTE-------GHVLVKKNVRNSKYDPLVEEVELLQGNPLYSHIRYA 237
           PRMT  G+S+ +W L E          +    VR S  D ++ E ELL    +   ++  
Sbjct: 40  PRMTIPGQSISNWDLMERLKRAIDPIQMDSCKVRESNIDSVIFEAELLSLGIMQKTMKIL 99

Query: 238 DGRESTVS 261
           DG    VS
Sbjct: 100 DGFSMKVS 107


>AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstream,
           human gene xe7related protein 7 protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +1

Query: 79  PRMTSNGESLPSWLLTE-------GHVLVKKNVRNSKYDPLVEEVELLQGNPLYSHIRYA 237
           PRMT  G+S+ +W L E          +    VR S  D ++ E ELL    +   ++  
Sbjct: 40  PRMTIPGQSISNWDLMERLKRAIDPIQMDSCKVRESNIDSVIFEAELLSLGIMQKTMKIL 99

Query: 238 DGRESTVS 261
           DG    VS
Sbjct: 100 DGFSMKVS 107


>AL032647-2|CAA21689.1|  178|Caenorhabditis elegans Hypothetical
           protein Y57A10B.2 protein.
          Length = 178

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 317 TAQQHKKKVPS-SETQLEPSESYTEPVRRSTRERRIPHYLEDYVV 448
           ++ ++KKKV   S   L  S S +EP   STR+R I H    +VV
Sbjct: 104 SSSEYKKKVKRLSSNPLSSSTSSSEP-STSTRKRSIFHEKPQFVV 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,522
Number of Sequences: 27780
Number of extensions: 221639
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)