Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P13
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771...    27   5.8  
04_04_1194 - 31643422-31643511,31643695-31643805,31643892-316444...    27   7.7  

>03_02_0348 +
           7709894-7709926,7710516-7710604,7711202-7711277,
           7712019-7712214,7712449-7712832,7712884-7714804,
           7714906-7714966,7715952-7716371
          Length = 1059

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 378 KYIVYYPGSHSHLTTGEIMVKTLSLK 455
           KY+   P +++HLT  E  VKTL+ K
Sbjct: 72  KYVQISPETYAHLTESEEQVKTLNEK 97


>04_04_1194 -
           31643422-31643511,31643695-31643805,31643892-31644406,
           31644456-31644756
          Length = 338

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 99  ECHIKRMLVGLHLLSIYLRHEVGCGEVTTHDISIR 203
           +C  KR L+GL   + Y+  E+G G V  HD S R
Sbjct: 2   DCQSKRTLMGL---AEYVAGELGLGLVRAHDTSPR 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,221,344
Number of Sequences: 37544
Number of extensions: 234048
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)