Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_P12
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        25   0.55 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   2.9  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   5.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 4   AVSRSARAGLQFPVGRIPRHSQNRTTSSPSCRSYGS 111
           AV+ + +     P G  P+HS +  ++SP+ R+  S
Sbjct: 52  AVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSS 87


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 100 SYGSSLFCCYSGISNSRGFRVSGKCIKGLESQTYHPKTF 216
           +YG  L    SG    R F      ++  + Q Y P  F
Sbjct: 403 AYGELLHALTSGKCEHRPFEPKSTAVQKYQDQDYQPIYF 441


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 97  RSYGSSLFCCYSGISNSRGFRVSGKCIKGLESQTYH 204
           R+YG  L C +       G  +S   I G+    YH
Sbjct: 66  RNYGCFLACIWQQTGVMNGSELSTYNIAGIIEGQYH 101


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 271 CWWRCYSTYT*ISHWQE 321
           C+W  Y TY     WQ+
Sbjct: 486 CYWVIYVTYQEEFKWQD 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,051
Number of Sequences: 438
Number of extensions: 2734
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)